RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 MYH14Q7Z406 1995 aaKnown RBP28.54■■■□□ 2.16
SSNA1-202ENST00000459860 ZNF496Q96IT1 587 aaPredicted RBP28.54■■■□□ 2.16
SSNA1-202ENST00000459860 THUMPD2Q9BTF0 503 aaKnown RBP28.54■■■□□ 2.16
SSNA1-202ENST00000459860 RTCBQ9Y3I0 505 aaKnown RBP28.54■■■□□ 2.16
SSNA1-202ENST00000459860 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.53■■■□□ 2.16
SSNA1-202ENST00000459860 CRKLP46109 303 aaKnown RBP28.53■■■□□ 2.16
SSNA1-202ENST00000459860 CHD4Q14839 1912 aa28.53■■■□□ 2.16
SSNA1-202ENST00000459860 GRIN3BO60391 1043 aa28.52■■■□□ 2.16
SSNA1-202ENST00000459860 TEX13AQ9BXU3 409 aaPredicted RBP28.52■■■□□ 2.16
SSNA1-202ENST00000459860 APAF1O14727 1248 aa28.5■■■□□ 2.15
SSNA1-202ENST00000459860 STARD3NLO95772 234 aa28.5■■■□□ 2.15
SSNA1-202ENST00000459860 KCNQ3O43525 872 aa28.49■■■□□ 2.15
SSNA1-202ENST00000459860 ADRA2BP18089 450 aa28.49■■■□□ 2.15
SSNA1-202ENST00000459860 CCDC87Q9NVE4 849 aa28.49■■■□□ 2.15
SSNA1-202ENST00000459860 RPS6KA4O75676 772 aa28.48■■■□□ 2.15
SSNA1-202ENST00000459860 CYP19A1P11511 503 aaPredicted RBP28.48■■■□□ 2.15
SSNA1-202ENST00000459860 TRAPPC3LQ5T215 181 aa28.48■■■□□ 2.15
SSNA1-202ENST00000459860 LAMB4A4D0S4 1761 aa28.47■■■□□ 2.15
SSNA1-202ENST00000459860 C4AP0C0L4 1744 aa28.47■■■□□ 2.15
SSNA1-202ENST00000459860 MIS18AQ9NYP9 233 aa28.47■■■□□ 2.15
SSNA1-202ENST00000459860 TRIM35Q9UPQ4 493 aa28.47■■■□□ 2.15
SSNA1-202ENST00000459860 TSPYL4Q9UJ04 414 aa28.46■■■□□ 2.15
SSNA1-202ENST00000459860 FAM9BQ8IZU0 186 aa28.45■■■□□ 2.14
SSNA1-202ENST00000459860 BABAM1Q9NWV8 329 aa28.45■■■□□ 2.14
SSNA1-202ENST00000459860 SNRPA1P09661 255 aaKnown RBP28.44■■■□□ 2.14
SSNA1-202ENST00000459860 DIEXFQ68CQ4 756 aaKnown RBP28.44■■■□□ 2.14
SSNA1-202ENST00000459860 INTS5Q6P9B9 1019 aaKnown RBP28.44■■■□□ 2.14
SSNA1-202ENST00000459860 RFC4P35249 363 aa28.43■■■□□ 2.14
SSNA1-202ENST00000459860 CALD1Q05682 793 aaKnown RBP28.43■■■□□ 2.14
SSNA1-202ENST00000459860 SENP3-EIF4A1A0A087X0R7 540 aa28.42■■■□□ 2.14
SSNA1-202ENST00000459860 GIGYF1O75420 1035 aaPredicted RBP28.42■■■□□ 2.14
SSNA1-202ENST00000459860 ZBTB1Q9Y2K1 713 aa28.41■■■□□ 2.14
SSNA1-202ENST00000459860 ARHGEF1Q92888 912 aaKnown RBP28.4■■■□□ 2.14
SSNA1-202ENST00000459860 LAS1LQ9Y4W2 734 aaKnown RBP28.4■■■□□ 2.14
SSNA1-202ENST00000459860 SOS1Q07889 1333 aaPredicted RBP28.4■■■□□ 2.14
SSNA1-202ENST00000459860 CANXP27824 592 aaKnown RBP28.39■■■□□ 2.14
SSNA1-202ENST00000459860 NPM2Q86SE8 214 aaKnown RBP28.39■■■□□ 2.14
SSNA1-202ENST00000459860 COL15A1P39059 1388 aa28.38■■■□□ 2.13
SSNA1-202ENST00000459860 CCER2I3L3R5 266 aa28.38■■■□□ 2.13
SSNA1-202ENST00000459860 EIF4A1P60842 406 aaKnown RBP28.38■■■□□ 2.13
SSNA1-202ENST00000459860 USP16Q9Y5T5 823 aa28.36■■■□□ 2.13
SSNA1-202ENST00000459860 ATP10DQ9P241 1426 aa28.35■■■□□ 2.13
SSNA1-202ENST00000459860 PRAMEF22A3QJZ6 481 aa28.35■■■□□ 2.13
SSNA1-202ENST00000459860 ZNF330Q9Y3S2 320 aaPredicted RBP28.35■■■□□ 2.13
SSNA1-202ENST00000459860 A0A087WZG4 1122 aa28.34■■■□□ 2.13
SSNA1-202ENST00000459860 ZPR1O75312 459 aa28.34■■■□□ 2.13
SSNA1-202ENST00000459860 CCDC27Q2M243 656 aa28.34■■■□□ 2.13
SSNA1-202ENST00000459860 CFAP44Q96MT7 982 aa28.34■■■□□ 2.13
SSNA1-202ENST00000459860 USP42Q9H9J4 1324 aaKnown RBP28.34■■■□□ 2.13
SSNA1-202ENST00000459860 ADCY9O60503 1353 aa28.34■■■□□ 2.13
SSNA1-202ENST00000459860 CHL1O00533 1208 aa28.33■■■□□ 2.13
SSNA1-202ENST00000459860 IL6STP40189 918 aaPredicted RBP28.33■■■□□ 2.13
SSNA1-202ENST00000459860 NCBP3Q53F19 620 aaKnown RBP28.33■■■□□ 2.13
SSNA1-202ENST00000459860 NLGN1Q8N2Q7 840 aa28.33■■■□□ 2.13
SSNA1-202ENST00000459860 A1BGP04217 495 aa28.32■■■□□ 2.12
SSNA1-202ENST00000459860 GNAI1P63096 354 aa28.32■■■□□ 2.12
SSNA1-202ENST00000459860 IFT57Q9NWB7 429 aa28.32■■■□□ 2.12
SSNA1-202ENST00000459860 MMP10P09238 476 aa28.31■■■□□ 2.12
SSNA1-202ENST00000459860 EIF5P55010 431 aaKnown RBP28.31■■■□□ 2.12
SSNA1-202ENST00000459860 WWC3Q9ULE0 1092 aa28.31■■■□□ 2.12
SSNA1-202ENST00000459860 GYS1P13807 737 aa28.3■■■□□ 2.12
SSNA1-202ENST00000459860 SRP68Q9UHB9 627 aaKnown RBP28.3■■■□□ 2.12
SSNA1-202ENST00000459860 SCN7AQ01118 1682 aa28.29■■■□□ 2.12
SSNA1-202ENST00000459860 NARFQ9UHQ1 456 aa28.29■■■□□ 2.12
SSNA1-202ENST00000459860 NGEFQ8N5V2 710 aa28.28■■■□□ 2.12
SSNA1-202ENST00000459860 USPL1Q5W0Q7 1092 aa28.27■■■□□ 2.12
SSNA1-202ENST00000459860 WWC1Q8IX03 1113 aa28.27■■■□□ 2.12
SSNA1-202ENST00000459860 MBIPQ9NS73 344 aa28.26■■■□□ 2.11
SSNA1-202ENST00000459860 SALL2Q9Y467 1007 aaPredicted RBP28.26■■■□□ 2.11
SSNA1-202ENST00000459860 BCORQ6W2J9 1755 aa28.26■■■□□ 2.11
SSNA1-202ENST00000459860 ZNF853P0CG23 659 aa28.25■■■□□ 2.11
SSNA1-202ENST00000459860 PIP4K2AP48426 406 aaPredicted RBP28.25■■■□□ 2.11
SSNA1-202ENST00000459860 PXDNLA1KZ92 1463 aa28.25■■■□□ 2.11
SSNA1-202ENST00000459860 ERBB4Q15303 1308 aa28.24■■■□□ 2.11
SSNA1-202ENST00000459860 GPBP1L1Q9HC44 474 aaPredicted RBP28.23■■■□□ 2.11
SSNA1-202ENST00000459860 IL16Q14005 1332 aa28.22■■■□□ 2.11
SSNA1-202ENST00000459860 EIF2S2P20042 333 aaKnown RBP28.22■■■□□ 2.11
SSNA1-202ENST00000459860 FKBP8Q14318 412 aa28.22■■■□□ 2.11
SSNA1-202ENST00000459860 DZIP3Q86Y13 1208 aaKnown RBP28.22■■■□□ 2.11
SSNA1-202ENST00000459860 MIER1Q8N108 512 aa28.22■■■□□ 2.11
SSNA1-202ENST00000459860 TBC1D2BQ9UPU7 963 aa28.22■■■□□ 2.11
SSNA1-202ENST00000459860 PARP3Q9Y6F1 533 aa28.22■■■□□ 2.11
SSNA1-202ENST00000459860 C10orf71Q711Q0 1435 aa28.21■■■□□ 2.11
SSNA1-202ENST00000459860 NBPF26B4DH59 902 aa28.21■■■□□ 2.11
SSNA1-202ENST00000459860 HOXB7P09629 217 aa28.21■■■□□ 2.11
SSNA1-202ENST00000459860 TGFB2P61812 414 aa28.21■■■□□ 2.11
SSNA1-202ENST00000459860 NBPF10Q6P3W6 841 aaKnown RBP28.21■■■□□ 2.11
SSNA1-202ENST00000459860 NBPF15Q8N660 670 aa28.21■■■□□ 2.11
SSNA1-202ENST00000459860 CEP350Q5VT06 3117 aa28.19■■■□□ 2.1
SSNA1-202ENST00000459860 WDR63Q8IWG1 891 aa28.19■■■□□ 2.1
SSNA1-202ENST00000459860 A0A0G2JLW4 131 aa28.18■■■□□ 2.1
SSNA1-202ENST00000459860 MYL6BP14649 208 aa28.18■■■□□ 2.1
SSNA1-202ENST00000459860 KRT24Q2M2I5 525 aa28.18■■■□□ 2.1
SSNA1-202ENST00000459860 ZNF526Q8TF50 670 aaPredicted RBP28.18■■■□□ 2.1
SSNA1-202ENST00000459860 ZNF652Q9Y2D9 606 aa28.17■■■□□ 2.1
SSNA1-202ENST00000459860 HDGFL1Q5TGJ6 251 aa28.16■■■□□ 2.1
SSNA1-202ENST00000459860 DUSP27Q5VZP5 1158 aa28.16■■■□□ 2.1
SSNA1-202ENST00000459860 CAMTA2O94983 1202 aa28.15■■■□□ 2.1
SSNA1-202ENST00000459860 KIF6Q6ZMV9 814 aa28.15■■■□□ 2.1
SSNA1-202ENST00000459860 NECTIN2Q92692 538 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms