RNA–Protein interactions for RNA: ENST00000457039.6

SMPD4-215, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-215ENST00000457039 LAS1LQ9Y4W2 734 aaKnown RBP18.44■□□□□ 0.54
SMPD4-215ENST00000457039 CASZ1Q86V15 1759 aa18.44■□□□□ 0.54
SMPD4-215ENST00000457039 PDGFDQ9GZP0 370 aaPredicted RBP18.43■□□□□ 0.54
SMPD4-215ENST00000457039 USP16Q9Y5T5 823 aa18.42■□□□□ 0.54
SMPD4-215ENST00000457039 LAMB4A4D0S4 1761 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 GNPATO15228 680 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 RPS6KA4O75676 772 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 STARD3NLO95772 234 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 SSFA2P28290 1259 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 CCDC87Q9NVE4 849 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 ZBTB1Q9Y2K1 713 aa18.41■□□□□ 0.54
SMPD4-215ENST00000457039 KRT24Q2M2I5 525 aa18.4■□□□□ 0.54
SMPD4-215ENST00000457039 SMIM5Q71RC9 77 aa18.4■□□□□ 0.54
SMPD4-215ENST00000457039 COL23A1Q86Y22 540 aaPredicted RBP18.4■□□□□ 0.54
SMPD4-215ENST00000457039 SPINK5Q9NQ38 1064 aaPredicted RBP18.4■□□□□ 0.54
SMPD4-215ENST00000457039 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.39■□□□□ 0.53
SMPD4-215ENST00000457039 RTCBQ9Y3I0 505 aaKnown RBP18.39■□□□□ 0.53
SMPD4-215ENST00000457039 SOS1Q07889 1333 aaPredicted RBP18.39■□□□□ 0.53
SMPD4-215ENST00000457039 FLAD1Q8NFF5 587 aa18.38■□□□□ 0.53
SMPD4-215ENST00000457039 TSR2Q969E8 191 aaKnown RBP18.38■□□□□ 0.53
SMPD4-215ENST00000457039 A1BGP04217 495 aa18.37■□□□□ 0.53
SMPD4-215ENST00000457039 ADRA2BP18089 450 aa18.37■□□□□ 0.53
SMPD4-215ENST00000457039 FANCIQ9NVI1 1328 aa18.37■□□□□ 0.53
SMPD4-215ENST00000457039 PHF14O94880 888 aa18.36■□□□□ 0.53
SMPD4-215ENST00000457039 HOXB7P09629 217 aa18.36■□□□□ 0.53
SMPD4-215ENST00000457039 EIF5P55010 431 aaKnown RBP18.36■□□□□ 0.53
SMPD4-215ENST00000457039 NBPF26B4DH59 902 aa18.35■□□□□ 0.53
SMPD4-215ENST00000457039 CANXP27824 592 aaKnown RBP18.35■□□□□ 0.53
SMPD4-215ENST00000457039 IL6STP40189 918 aaPredicted RBP18.35■□□□□ 0.53
SMPD4-215ENST00000457039 TRAPPC3LQ5T215 181 aa18.35■□□□□ 0.53
SMPD4-215ENST00000457039 NBPF10Q6P3W6 841 aaKnown RBP18.35■□□□□ 0.53
SMPD4-215ENST00000457039 NBPF15Q8N660 670 aa18.35■□□□□ 0.53
SMPD4-215ENST00000457039 SLC16A10Q8TF71 515 aa18.35■□□□□ 0.53
SMPD4-215ENST00000457039 ARHGEF1Q92888 912 aaKnown RBP18.35■□□□□ 0.53
SMPD4-215ENST00000457039 C4AP0C0L4 1744 aa18.35■□□□□ 0.53
SMPD4-215ENST00000457039 COL15A1P39059 1388 aa18.34■□□□□ 0.53
SMPD4-215ENST00000457039 DUSP27Q5VZP5 1158 aa18.34■□□□□ 0.53
SMPD4-215ENST00000457039 C8orf58Q8NAV2 365 aa18.34■□□□□ 0.53
SMPD4-215ENST00000457039 ERBB4Q15303 1308 aa18.33■□□□□ 0.53
SMPD4-215ENST00000457039 GOLGA2Q08379 1002 aa18.33■□□□□ 0.52
SMPD4-215ENST00000457039 COL24A1Q17RW2 1714 aa18.32■□□□□ 0.52
SMPD4-215ENST00000457039 ZBTB7AO95365 584 aa18.32■□□□□ 0.52
SMPD4-215ENST00000457039 PIP4K2AP48426 406 aaPredicted RBP18.32■□□□□ 0.52
SMPD4-215ENST00000457039 HNRNPUQ00839 825 aaKnown RBP eCLIP18.32■□□□□ 0.52
SMPD4-215ENST00000457039 TSPYL6Q8N831 410 aa18.32■□□□□ 0.52
SMPD4-215ENST00000457039 MTFR1LQ9H019 292 aa18.32■□□□□ 0.52
SMPD4-215ENST00000457039 MYH16Q9H6N6 1097 aa18.32■□□□□ 0.52
SMPD4-215ENST00000457039 MSH5O43196 834 aa18.31■□□□□ 0.52
SMPD4-215ENST00000457039 EIF2S2P20042 333 aaKnown RBP18.31■□□□□ 0.52
SMPD4-215ENST00000457039 SLFN5Q08AF3 891 aa18.31■□□□□ 0.52
SMPD4-215ENST00000457039 PDIA6Q15084 440 aa18.31■□□□□ 0.52
SMPD4-215ENST00000457039 LRP10Q7Z4F1 713 aa18.31■□□□□ 0.52
SMPD4-215ENST00000457039 USP42Q9H9J4 1324 aaKnown RBP18.3■□□□□ 0.52
SMPD4-215ENST00000457039 E9PSI1 815 aa18.3■□□□□ 0.52
SMPD4-215ENST00000457039 RFC4P35249 363 aa18.3■□□□□ 0.52
SMPD4-215ENST00000457039 TRMT2AQ8IZ69 625 aaKnown RBP18.3■□□□□ 0.52
SMPD4-215ENST00000457039 CDCA7LQ96GN5 454 aa18.3■□□□□ 0.52
SMPD4-215ENST00000457039 ELL2O00472 640 aaPredicted RBP18.29■□□□□ 0.52
SMPD4-215ENST00000457039 HDGFL1Q5TGJ6 251 aa18.29■□□□□ 0.52
SMPD4-215ENST00000457039 SGIP1Q9BQI5 828 aa18.29■□□□□ 0.52
SMPD4-215ENST00000457039 NARFQ9UHQ1 456 aa18.29■□□□□ 0.52
SMPD4-215ENST00000457039 SRCAPQ6ZRS2 3230 aa18.29■□□□□ 0.52
SMPD4-215ENST00000457039 LRP5O75197 1615 aa18.28■□□□□ 0.52
SMPD4-215ENST00000457039 A0A087WZG4 1122 aa18.28■□□□□ 0.52
SMPD4-215ENST00000457039 GYS1P13807 737 aa18.28■□□□□ 0.52
SMPD4-215ENST00000457039 EXOSC9Q06265 439 aaKnown RBP18.28■□□□□ 0.52
SMPD4-215ENST00000457039 PROSER3Q2NL68 480 aa18.28■□□□□ 0.52
SMPD4-215ENST00000457039 TWISTNBQ3B726 338 aaPredicted RBP18.28■□□□□ 0.52
SMPD4-215ENST00000457039 SPON1Q9HCB6 807 aa18.28■□□□□ 0.52
SMPD4-215ENST00000457039 SRP68Q9UHB9 627 aaKnown RBP18.28■□□□□ 0.52
SMPD4-215ENST00000457039 ATF5Q9Y2D1 282 aaPredicted RBP18.28■□□□□ 0.52
SMPD4-215ENST00000457039 PTGER2P43116 358 aa18.27■□□□□ 0.52
SMPD4-215ENST00000457039 NECTIN2Q92692 538 aa18.27■□□□□ 0.52
SMPD4-215ENST00000457039 DDX21Q9NR30 783 aaKnown RBP eCLIP18.27■□□□□ 0.52
SMPD4-215ENST00000457039 ZNF330Q9Y3S2 320 aaPredicted RBP18.27■□□□□ 0.52
SMPD4-215ENST00000457039 ZBED9Q6R2W3 1325 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 SCN7AQ01118 1682 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 VAMP4O75379 141 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 ANXA1P04083 346 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 MYL6BP14649 208 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 USPL1Q5W0Q7 1092 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 BCL2L12Q9HB09 334 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 CHPF2Q9P2E5 772 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 TBC1D2BQ9UPU7 963 aa18.26■□□□□ 0.51
SMPD4-215ENST00000457039 ZPR1O75312 459 aa18.25■□□□□ 0.51
SMPD4-215ENST00000457039 CAMTA2O94983 1202 aa18.25■□□□□ 0.51
SMPD4-215ENST00000457039 MSL1Q68DK7 614 aa18.25■□□□□ 0.51
SMPD4-215ENST00000457039 DZIP3Q86Y13 1208 aaKnown RBP18.25■□□□□ 0.51
SMPD4-215ENST00000457039 DBF4Q9UBU7 674 aaPredicted RBP18.25■□□□□ 0.51
SMPD4-215ENST00000457039 BCORQ6W2J9 1755 aa18.25■□□□□ 0.51
SMPD4-215ENST00000457039 FKBP8Q14318 412 aa18.24■□□□□ 0.51
SMPD4-215ENST00000457039 NLGN1Q8N2Q7 840 aa18.24■□□□□ 0.51
SMPD4-215ENST00000457039 CCDC30Q5VVM6 783 aa18.23■□□□□ 0.51
SMPD4-215ENST00000457039 TTLL7Q6ZT98 887 aa18.23■□□□□ 0.51
SMPD4-215ENST00000457039 NPM2Q86SE8 214 aaKnown RBP18.23■□□□□ 0.51
SMPD4-215ENST00000457039 CHMP4AQ9BY43 222 aa18.23■□□□□ 0.51
SMPD4-215ENST00000457039 RGL2O15211 777 aa18.22■□□□□ 0.51
SMPD4-215ENST00000457039 HYPKQ9NX55 129 aa18.21■□□□□ 0.51
SMPD4-215ENST00000457039 MAP3K15Q6ZN16 1313 aa18.21■□□□□ 0.51
SMPD4-215ENST00000457039 ERVV-1B6SEH8 477 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms