RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 LYPD8Q6UX82 237 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 GLYCTKQ8IVS8 523 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 MPNDQ8N594 471 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 SUGT1Q9Y2Z0 365 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 RPS6KL1Q9Y6S9 549 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 CASKIN1Q8WXD9 1431 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 HSP90AA1P07900 732 aaKnown RBP6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 RALBP1Q15311 655 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 OCLNQ16625 522 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 RNF19BQ6ZMZ0 732 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 ARMCX6Q7L4S7 300 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 EVI5LQ96CN4 794 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 OCSTAMPQ9BR26 566 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 CAMSAP1Q5T5Y3 1602 aa6.11□□□□□ -1.43
CCDC88A-209ENST00000456975 UBAP1LF5GYI3 381 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 TCERG1O14776 1098 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 ERCC5P28715 1186 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 GORABQ5T7V8 394 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 GIMAP6Q6P9H5 292 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 PHTF2Q8N3S3 785 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 SDR16C5Q8N3Y7 309 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 FAM161BQ96MY7 647 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 PCDHB9Q9Y5E1 797 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 ATP10AO60312 1499 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 CCER2I3L3R5 266 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 ICMTO60725 284 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 FOXD4Q12950 439 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 SWI5Q1ZZU3 235 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 NBPF9Q3BBW0 867 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 BLOC1S3Q6QNY0 202 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 MTA3Q9BTC8 594 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 NCOA1Q15788 1441 aa6.1□□□□□ -1.43
CCDC88A-209ENST00000456975 SFI1A8K8P3 1242 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 GABBR2O75899 941 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 DKK1O94907 266 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 VAMP1P23763 118 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 POLD1P28340 1107 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 CLCN6P51797 869 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 HSP90AB3PQ58FF7 597 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 SAMD7Q7Z3H4 446 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 GTF3C2Q8WUA4 911 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 PURBQ96QR8 312 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 TSPAN18Q96SJ8 248 aa6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 DNAAF2Q9NVR5 837 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 DNMT3AQ9Y6K1 912 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 ZNF142P52746 1687 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-209ENST00000456975 DIP2CQ9Y2E4 1556 aa6.09□□□□□ -1.44
CCDC88A-209ENST00000456975 ARHGAP4P98171 946 aa6.09□□□□□ -1.44
CCDC88A-209ENST00000456975 FAM43AQ8N2R8 423 aa6.09□□□□□ -1.44
CCDC88A-209ENST00000456975 UBXN4Q92575 508 aa6.09□□□□□ -1.44
CCDC88A-209ENST00000456975 CXXC1Q9P0U4 656 aaPredicted RBP6.09□□□□□ -1.44
CCDC88A-209ENST00000456975 ABCA6Q8N139 1617 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 MYO3AQ8NEV4 1616 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 FYCO1Q9BQS8 1478 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 MROH2AA6NES4 1674 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 ZBTB7BO15156 539 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 EML3Q32P44 896 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 TRAF7Q6Q0C0 670 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 ASB16Q96NS5 453 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 RNF19AQ9NV58 838 aa6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 CDK13Q14004 1512 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 POLR1AO95602 1720 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-209ENST00000456975 F12P00748 615 aaPredicted RBP6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 CTHP32929 405 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 PSEN2P49810 448 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 HDLBPQ00341 1268 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 MORN1Q5T089 497 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 DESI1Q6ICB0 168 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 TAS1R3Q7RTX0 852 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 ZC3H4Q9UPT8 1303 aaKnown RBP6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 SCAPERQ9BY12 1400 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 DOK7Q18PE1 504 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 C1orf216Q8TAB5 229 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 PDCL3Q9H2J4 239 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.07□□□□□ -1.446e-6■■■■■ 48.1
CCDC88A-209ENST00000456975 DCTN4Q9UJW0 460 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 CCDC18Q5T9S5 1454 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 WASHC2CQ9Y4E1 1318 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 LRRIQ1Q96JM4 1722 aa6.07□□□□□ -1.44
CCDC88A-209ENST00000456975 REREQ9P2R6 1566 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 PPFIA4O75335 1185 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 NAA30Q147X3 362 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 RGL3Q3MIN7 710 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 OXLD1Q5BKU9 147 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 LDLRAD1Q5T700 205 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 ZNF662Q6ZS27 426 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 ZBED2Q9BTP6 218 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 VPS8Q8N3P4 1428 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 ZNF335Q9H4Z2 1342 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 KDM5CP41229 1560 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 C21orf2O43822 256 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 P4HBP07237 508 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 EAPPQ56P03 285 aaPredicted RBP6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 KRBA2Q6ZNG9 492 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 DPH6Q7L8W6 267 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 TPCN2Q8NHX9 752 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 HINFPQ9BQA5 517 aa6.06□□□□□ -1.44
CCDC88A-209ENST00000456975 HDGFP51858 240 aaKnown RBP6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 CCDC102BQ68D86 513 aa6.05□□□□□ -1.44
CCDC88A-209ENST00000456975 NGEFQ8N5V2 710 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms