RNA–Protein interactions for RNA: ENST00000448539.1

GTF3C3-206, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 3

Gene GTF3C3, Length 796 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-206ENST00000448539 EIF4A1P60842 406 aaKnown RBP18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 CCDC27Q2M243 656 aa18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 INTS5Q6P9B9 1019 aaKnown RBP18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 SMIM5Q71RC9 77 aa18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 NPM2Q86SE8 214 aaKnown RBP18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 AMIGO3Q86WK7 504 aa18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 SGIP1Q9BQI5 828 aa18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 SALL2Q9Y467 1007 aaPredicted RBP18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 QSER1Q2KHR3 1735 aa18.28■□□□□ 0.52
GTF3C3-206ENST00000448539 CICQ96RK0 1608 aaPredicted RBP18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 COL5A3P25940 1745 aaPredicted RBP18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 CHL1O00533 1208 aa18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 CANXP27824 592 aaKnown RBP18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 RFC4P35249 363 aa18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 NCBP3Q53F19 620 aaKnown RBP18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 CFAP44Q96MT7 982 aa18.27■□□□□ 0.52
GTF3C3-206ENST00000448539 TUBGCP6Q96RT7 1819 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 GNAI1P63096 354 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 WWC1Q8IX03 1113 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 NGEFQ8N5V2 710 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 ARHGEF1Q92888 912 aaKnown RBP18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 IFT57Q9NWB7 429 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 ZBTB1Q9Y2K1 713 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 USP16Q9Y5T5 823 aa18.26■□□□□ 0.51
GTF3C3-206ENST00000448539 PRAMEF22A3QJZ6 481 aa18.25■□□□□ 0.51
GTF3C3-206ENST00000448539 GIGYF1O75420 1035 aaPredicted RBP18.25■□□□□ 0.51
GTF3C3-206ENST00000448539 POLD1P28340 1107 aa18.25■□□□□ 0.51
GTF3C3-206ENST00000448539 UBR3Q6ZT12 1888 aa18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 DCAF8L1A6NGE4 600 aa18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 A1BGP04217 495 aa18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 MSL1Q68DK7 614 aa18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 FHDC1Q9C0D6 1143 aaPredicted RBP18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 ZNF330Q9Y3S2 320 aaPredicted RBP18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 KDM3BQ7LBC6 1761 aa18.24■□□□□ 0.51
GTF3C3-206ENST00000448539 SOS1Q07889 1333 aaPredicted RBP18.23■□□□□ 0.51
GTF3C3-206ENST00000448539 A0A087WZG4 1122 aa18.23■□□□□ 0.51
GTF3C3-206ENST00000448539 ZPR1O75312 459 aa18.22■□□□□ 0.51
GTF3C3-206ENST00000448539 YY1P25490 414 aa18.22■□□□□ 0.51
GTF3C3-206ENST00000448539 ARXQ96QS3 562 aa18.22■□□□□ 0.51
GTF3C3-206ENST00000448539 SYT17Q9BSW7 474 aa18.22■□□□□ 0.51
GTF3C3-206ENST00000448539 MBIPQ9NS73 344 aa18.22■□□□□ 0.51
GTF3C3-206ENST00000448539 COL15A1P39059 1388 aa18.21■□□□□ 0.51
GTF3C3-206ENST00000448539 MYH14Q7Z406 1995 aaKnown RBP18.21■□□□□ 0.51
GTF3C3-206ENST00000448539 ZNF853P0CG23 659 aa18.21■□□□□ 0.51
GTF3C3-206ENST00000448539 IL6STP40189 918 aaPredicted RBP18.21■□□□□ 0.51
GTF3C3-206ENST00000448539 UTRNP46939 3433 aa18.2■□□□□ 0.5
GTF3C3-206ENST00000448539 EIF5P55010 431 aaKnown RBP18.2■□□□□ 0.5
GTF3C3-206ENST00000448539 WDR63Q8IWG1 891 aa18.2■□□□□ 0.5
GTF3C3-206ENST00000448539 NLGN1Q8N2Q7 840 aa18.2■□□□□ 0.5
GTF3C3-206ENST00000448539 COL24A1Q17RW2 1714 aa18.2■□□□□ 0.5
GTF3C3-206ENST00000448539 IL16Q14005 1332 aa18.2■□□□□ 0.5
GTF3C3-206ENST00000448539 EIF2S2P20042 333 aaKnown RBP18.19■□□□□ 0.5
GTF3C3-206ENST00000448539 PIP4K2AP48426 406 aaPredicted RBP18.19■□□□□ 0.5
GTF3C3-206ENST00000448539 USP42Q9H9J4 1324 aaKnown RBP18.19■□□□□ 0.5
GTF3C3-206ENST00000448539 SRP68Q9UHB9 627 aaKnown RBP18.18■□□□□ 0.5
GTF3C3-206ENST00000448539 NARFQ9UHQ1 456 aa18.18■□□□□ 0.5
GTF3C3-206ENST00000448539 GYS1P13807 737 aa18.17■□□□□ 0.5
GTF3C3-206ENST00000448539 KRT24Q2M2I5 525 aa18.17■□□□□ 0.5
GTF3C3-206ENST00000448539 USPL1Q5W0Q7 1092 aa18.17■□□□□ 0.5
GTF3C3-206ENST00000448539 HOXB7P09629 217 aa18.16■□□□□ 0.5
GTF3C3-206ENST00000448539 DUSP27Q5VZP5 1158 aa18.16■□□□□ 0.5
GTF3C3-206ENST00000448539 TBC1D2BQ9UPU7 963 aa18.16■□□□□ 0.5
GTF3C3-206ENST00000448539 ERBB4Q15303 1308 aa18.16■□□□□ 0.5
GTF3C3-206ENST00000448539 NBPF26B4DH59 902 aa18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 MYL6BP14649 208 aa18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 NBPF10Q6P3W6 841 aaKnown RBP18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 DZIP3Q86Y13 1208 aaKnown RBP18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 KLHL34Q8N239 644 aa18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 NBPF15Q8N660 670 aa18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 NECTIN2Q92692 538 aa18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 TSR2Q969E8 191 aaKnown RBP18.15■□□□□ 0.5
GTF3C3-206ENST00000448539 MMP10P09238 476 aa18.14■□□□□ 0.49
GTF3C3-206ENST00000448539 FKBP8Q14318 412 aa18.14■□□□□ 0.49
GTF3C3-206ENST00000448539 HDGFL1Q5TGJ6 251 aa18.14■□□□□ 0.49
GTF3C3-206ENST00000448539 CHMP4AQ9BY43 222 aa18.14■□□□□ 0.49
GTF3C3-206ENST00000448539 MYH16Q9H6N6 1097 aa18.14■□□□□ 0.49
GTF3C3-206ENST00000448539 LAMB4A4D0S4 1761 aa18.14■□□□□ 0.49
GTF3C3-206ENST00000448539 ELL2O00472 640 aaPredicted RBP18.13■□□□□ 0.49
GTF3C3-206ENST00000448539 GOLGA2Q08379 1002 aa18.13■□□□□ 0.49
GTF3C3-206ENST00000448539 PARP3Q9Y6F1 533 aa18.13■□□□□ 0.49
GTF3C3-206ENST00000448539 C4AP0C0L4 1744 aa18.12■□□□□ 0.49
GTF3C3-206ENST00000448539 KIF6Q6ZMV9 814 aa18.11■□□□□ 0.49
GTF3C3-206ENST00000448539 C8orf58Q8NAV2 365 aa18.11■□□□□ 0.49
GTF3C3-206ENST00000448539 ZNF652Q9Y2D9 606 aa18.11■□□□□ 0.49
GTF3C3-206ENST00000448539 FANCIQ9NVI1 1328 aa18.11■□□□□ 0.49
GTF3C3-206ENST00000448539 CAMTA2O94983 1202 aa18.1■□□□□ 0.49
GTF3C3-206ENST00000448539 DDX21Q9NR30 783 aaKnown RBP eCLIP18.1■□□□□ 0.49
GTF3C3-206ENST00000448539 DBF4Q9UBU7 674 aaPredicted RBP18.1■□□□□ 0.49
GTF3C3-206ENST00000448539 GOLGB1Q14789 3259 aaKnown RBP18.09■□□□□ 0.49
GTF3C3-206ENST00000448539 ZNF521Q96K83 1311 aa18.09■□□□□ 0.49
GTF3C3-206ENST00000448539 BICDL1Q6ZP65 573 aa18.09■□□□□ 0.49
GTF3C3-206ENST00000448539 BCL2L12Q9HB09 334 aa18.09■□□□□ 0.49
GTF3C3-206ENST00000448539 CHPF2Q9P2E5 772 aa18.09■□□□□ 0.49
GTF3C3-206ENST00000448539 ANXA1P04083 346 aa18.08■□□□□ 0.48
GTF3C3-206ENST00000448539 TM4SF1P30408 202 aa18.08■□□□□ 0.48
GTF3C3-206ENST00000448539 PDIA6Q15084 440 aa18.08■□□□□ 0.48
GTF3C3-206ENST00000448539 PROSER3Q2NL68 480 aa18.08■□□□□ 0.48
GTF3C3-206ENST00000448539 TWISTNBQ3B726 338 aaPredicted RBP18.08■□□□□ 0.48
GTF3C3-206ENST00000448539 CCDC30Q5VVM6 783 aa18.08■□□□□ 0.48
GTF3C3-206ENST00000448539 CLEC4GQ6UXB4 293 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms