RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 ARHGAP31Q2M1Z3 1444 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 CCDC174Q6PII3 467 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 TMC2Q8TDI7 906 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 C22orf23Q9BZE7 217 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 PREX1Q8TCU6 1659 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 FGAP02671 866 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 S100BP04271 92 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-206ENST00000441438 HMGN5P82970 282 aaKnown RBP12.84□□□□□ -0.35
SYNE2-206ENST00000441438 JAZF1Q86VZ6 243 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 SVIPQ8NHG7 77 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 GLMNQ92990 594 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 WASHC2CQ9Y4E1 1318 aa12.84□□□□□ -0.35
SYNE2-206ENST00000441438 SYCP2Q9BX26 1530 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 POM121CA8CG34 1229 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 MPHOSPH10O00566 681 aaKnown RBP12.83□□□□□ -0.36
SYNE2-206ENST00000441438 E2F5Q15329 346 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 MFSD4BQ5TF39 518 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 VPS37AQ8NEZ2 397 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 TMEM88BA6NKF7 163 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 IFT88Q13099 833 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 CCDC92Q53HC0 331 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-206ENST00000441438 NAP1L4Q99733 375 aaKnown RBP12.83□□□□□ -0.36
SYNE2-206ENST00000441438 IQSEC3Q9UPP2 1182 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-206ENST00000441438 FGD6Q6ZV73 1430 aa12.83□□□□□ -0.36
SYNE2-206ENST00000441438 DYTNA2CJ06 578 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 HMMRO75330 724 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 C7P10643 843 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 PAX7P23759 505 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 MAN1A1P33908 653 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 UBE4AQ14139 1066 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 JDP2Q8WYK2 163 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 SLC39A13Q96H72 371 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 PCMTD1Q96MG8 357 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 DDX56Q9NY93 547 aaKnown RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 VAMP1P23763 118 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 KANK3Q6NY19 840 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 CCDC47Q96A33 483 aaKnown RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 ZHX1Q9UKY1 873 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 AKAP2Q9Y2D5 859 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 RPRD2Q5VT52 1461 aaKnown RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 LDHAP00338 332 aaKnown RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 U2AF1L5P0DN76 240 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 U2AF1Q01081 240 aaKnown RBP eCLIP12.82□□□□□ -0.36
SYNE2-206ENST00000441438 NBPF3Q9H094 633 aa12.82□□□□□ -0.36
SYNE2-206ENST00000441438 IPO5O00410 1097 aaKnown RBP12.81□□□□□ -0.36
SYNE2-206ENST00000441438 IFT57Q9NWB7 429 aa12.81□□□□□ -0.36
SYNE2-206ENST00000441438 CEP83Q9Y592 693 aa12.81□□□□□ -0.36
SYNE2-206ENST00000441438 TET3O43151 1660 aa12.81□□□□□ -0.36
SYNE2-206ENST00000441438 SIGLEC1Q9BZZ2 1709 aa12.81□□□□□ -0.36
SYNE2-206ENST00000441438 GJC2Q5T442 439 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-206ENST00000441438 NUTM2GQ5VZR2 741 aa12.81□□□□□ -0.36
SYNE2-206ENST00000441438 MPHOSPH6Q99547 160 aaKnown RBP12.81□□□□□ -0.36
SYNE2-206ENST00000441438 ALDH8A1Q9H2A2 487 aaPredicted RBP12.81□□□□□ -0.36
SYNE2-206ENST00000441438 ZHX3Q9H4I2 956 aa12.81□□□□□ -0.36
SYNE2-206ENST00000441438 E2F4Q16254 413 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 SMYD5Q6GMV2 418 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 ALDH1L2Q3SY69 923 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 BRINP2Q9C0B6 783 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 SUDS3Q9H7L9 328 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-206ENST00000441438 ERICH4A6NGS2 130 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 CASQ1P31415 396 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 ENOX2Q16206 610 aaKnown RBP12.8□□□□□ -0.36
SYNE2-206ENST00000441438 GAS2L2Q8NHY3 880 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 NOL7Q9UMY1 257 aaKnown RBP12.8□□□□□ -0.36
SYNE2-206ENST00000441438 SLC45A1Q9Y2W3 748 aa12.8□□□□□ -0.36
SYNE2-206ENST00000441438 TSNAXIP1Q2TAA8 658 aa12.79□□□□□ -0.36
SYNE2-206ENST00000441438 DDX10Q13206 875 aaKnown RBP12.79□□□□□ -0.36
SYNE2-206ENST00000441438 CASS4Q9NQ75 786 aa12.79□□□□□ -0.36
SYNE2-206ENST00000441438 MTUS2Q5JR59 1369 aa12.78□□□□□ -0.36
SYNE2-206ENST00000441438 EIF5P55010 431 aaKnown RBP12.78□□□□□ -0.36
SYNE2-206ENST00000441438 CFAP53Q96M91 514 aa12.78□□□□□ -0.36
SYNE2-206ENST00000441438 KCNA2P16389 499 aa12.78□□□□□ -0.36
SYNE2-206ENST00000441438 SPATA31D1Q6ZQQ2 1576 aa12.78□□□□□ -0.36
SYNE2-206ENST00000441438 ATICP31939 592 aa12.77□□□□□ -0.37
SYNE2-206ENST00000441438 FILIP1Q7Z7B0 1213 aa12.77□□□□□ -0.37
SYNE2-206ENST00000441438 KIF20AO95235 890 aa12.77□□□□□ -0.37
SYNE2-206ENST00000441438 POU5F1BQ06416 359 aa12.77□□□□□ -0.37
SYNE2-206ENST00000441438 MICALL1Q8N3F8 863 aa12.77□□□□□ -0.37
SYNE2-206ENST00000441438 TTF2Q9UNY4 1162 aaKnown RBP12.77□□□□□ -0.37
SYNE2-206ENST00000441438 PIK3C2BO00750 1634 aa12.77□□□□□ -0.37
SYNE2-206ENST00000441438 MTA2O94776 668 aa12.76□□□□□ -0.37
SYNE2-206ENST00000441438 GTF2F1P35269 517 aaKnown RBP eCLIP12.76□□□□□ -0.37
SYNE2-206ENST00000441438 SAFB2Q14151 953 aaKnown RBP eCLIP12.76□□□□□ -0.37
SYNE2-206ENST00000441438 ANKRD13BQ86YJ7 626 aa12.76□□□□□ -0.37
SYNE2-206ENST00000441438 C16orf87Q6PH81 154 aa12.76□□□□□ -0.37
SYNE2-206ENST00000441438 ZSWIM4Q9H7M6 989 aa12.76□□□□□ -0.37
SYNE2-206ENST00000441438 CAMSAP1Q5T5Y3 1602 aa12.76□□□□□ -0.37
SYNE2-206ENST00000441438 MAPRE1Q15691 268 aaKnown RBP12.75□□□□□ -0.37
SYNE2-206ENST00000441438 CHST12Q9NRB3 414 aa12.75□□□□□ -0.37
SYNE2-206ENST00000441438 CHIC2Q9UKJ5 165 aa12.75□□□□□ -0.37
SYNE2-206ENST00000441438 SIM2Q14190 667 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-206ENST00000441438 L1TD1Q5T7N2 865 aaKnown RBP12.75□□□□□ -0.37
SYNE2-206ENST00000441438 CLK1P49759 484 aaKnown RBP12.75□□□□□ -0.37
SYNE2-206ENST00000441438 PRKAG2Q9UGJ0 569 aa12.75□□□□□ -0.37
SYNE2-206ENST00000441438 C3P01024 1663 aa12.74□□□□□ -0.37
SYNE2-206ENST00000441438 SCAPERQ9BY12 1400 aa12.74□□□□□ -0.37
SYNE2-206ENST00000441438 CFAP70Q5T0N1 1121 aa12.74□□□□□ -0.37
SYNE2-206ENST00000441438 MRPL42Q9Y6G3 142 aaKnown RBP12.74□□□□□ -0.37
SYNE2-206ENST00000441438 A2MP01023 1474 aa12.74□□□□□ -0.37
SYNE2-206ENST00000441438 DAPK1P53355 1430 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms