RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 A0A1B0GTH6 734 aa10.88□□□□□ -0.67
CCDC88A-206ENST00000430086 PPP1R12BO60237 982 aaPredicted RBP10.88□□□□□ -0.67
CCDC88A-206ENST00000430086 NOS2P35228 1153 aa10.88□□□□□ -0.67
CCDC88A-206ENST00000430086 PLA2G4AP47712 749 aa10.88□□□□□ -0.67
CCDC88A-206ENST00000430086 HIRAP54198 1017 aaPredicted RBP10.88□□□□□ -0.67
CCDC88A-206ENST00000430086 CCDC155Q8N6L0 562 aa10.88□□□□□ -0.67
CCDC88A-206ENST00000430086 SERTM1A2A2V5 107 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 LGR5O75473 907 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 OCLNQ16625 522 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 NPAS3Q8IXF0 933 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 RETREG2Q8NC44 543 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 L3MBTL2Q969R5 705 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 NXF1Q9UBU9 619 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 CHMP3Q9Y3E7 222 aa10.87□□□□□ -0.67
CCDC88A-206ENST00000430086 EML1O00423 815 aa10.86□□□□□ -0.67
CCDC88A-206ENST00000430086 PDE4CQ08493 712 aa10.86□□□□□ -0.67
CCDC88A-206ENST00000430086 C1orf216Q8TAB5 229 aa10.86□□□□□ -0.67
CCDC88A-206ENST00000430086 C2orf49Q9BVC5 232 aaPredicted RBP10.86□□□□□ -0.67
CCDC88A-206ENST00000430086 ZDHHC3Q9NYG2 299 aa10.86□□□□□ -0.67
CCDC88A-206ENST00000430086 SLAIN2Q9P270 581 aa10.86□□□□□ -0.67
CCDC88A-206ENST00000430086 FOXO3O43524 673 aa10.85□□□□□ -0.67
CCDC88A-206ENST00000430086 PPFIA3O75145 1194 aa10.85□□□□□ -0.67
CCDC88A-206ENST00000430086 F11P03951 625 aa10.85□□□□□ -0.67
CCDC88A-206ENST00000430086 PRMT3O60678 531 aa10.84□□□□□ -0.67
CCDC88A-206ENST00000430086 MSX1P28360 303 aa10.84□□□□□ -0.67
CCDC88A-206ENST00000430086 NBPF1Q3BBV0 1214 aa10.84□□□□□ -0.67
CCDC88A-206ENST00000430086 PRIMPOLQ96LW4 560 aa10.84□□□□□ -0.67
CCDC88A-206ENST00000430086 ZNF232Q9UNY5 417 aa10.84□□□□□ -0.67
CCDC88A-206ENST00000430086 PARP3Q9Y6F1 533 aa10.84□□□□□ -0.67
CCDC88A-206ENST00000430086 AIDAQ96BJ3 306 aa10.83□□□□□ -0.68
CCDC88A-206ENST00000430086 CXXC1Q9P0U4 656 aaPredicted RBP10.83□□□□□ -0.68
CCDC88A-206ENST00000430086 ITGA6P23229 1130 aa10.82□□□□□ -0.68
CCDC88A-206ENST00000430086 SH3PXD2AQ5TCZ1 1133 aa10.82□□□□□ -0.68
CCDC88A-206ENST00000430086 CHMP7Q8WUX9 453 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-206ENST00000430086 GAS2L1Q99501 681 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-206ENST00000430086 TERTO14746 1132 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 TATP17735 454 aaPredicted RBP10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 ATP4AP20648 1035 aa10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 ATP2B4P23634 1241 aa10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 TXLNAP40222 546 aa10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 C1orf53Q5VUE5 145 aa10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 GMCL1Q96IK5 515 aa10.81□□□□□ -0.68
CCDC88A-206ENST00000430086 CARNS1A5YM72 827 aa10.8□□□□□ -0.68
CCDC88A-206ENST00000430086 H3BM21 787 aa10.8□□□□□ -0.68
CCDC88A-206ENST00000430086 FKBP5Q13451 457 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-206ENST00000430086 CRISPLD1Q9H336 500 aa10.8□□□□□ -0.68
CCDC88A-206ENST00000430086 H7C1W4 665 aa10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 SSFA2P28290 1259 aa10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 LBRQ14739 615 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 TRIM22Q8IYM9 498 aa10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 C7orf43Q8WVR3 580 aa10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 NANOS1Q8WY41 292 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 COL26A1Q96A83 441 aa10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 HCN4Q9Y3Q4 1203 aa10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 GPC6Q9Y625 555 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-206ENST00000430086 RIPOR1Q6ZS17 1223 aa10.78□□□□□ -0.68
CCDC88A-206ENST00000430086 PHACTR1Q9C0D0 580 aa10.78□□□□□ -0.68
CCDC88A-206ENST00000430086 GPAMQ9HCL2 828 aa10.78□□□□□ -0.68
CCDC88A-206ENST00000430086 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.78□□□□□ -0.687e-6■■■■■ 74.5
CCDC88A-206ENST00000430086 CUEDC1Q9NWM3 386 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-206ENST00000430086 ALDH16A1Q8IZ83 802 aa10.77□□□□□ -0.69
CCDC88A-206ENST00000430086 PGBD3Q8N328 593 aa10.77□□□□□ -0.69
CCDC88A-206ENST00000430086 VTI1AQ96AJ9 217 aa10.77□□□□□ -0.69
CCDC88A-206ENST00000430086 VEGFBP49765 207 aa10.76□□□□□ -0.69
CCDC88A-206ENST00000430086 DBN1Q16643 649 aa10.76□□□□□ -0.69
CCDC88A-206ENST00000430086 SLC16A10Q8TF71 515 aa10.76□□□□□ -0.69
CCDC88A-206ENST00000430086 ZNF775Q96BV0 537 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-206ENST00000430086 ZIC5Q96T25 663 aa10.76□□□□□ -0.69
CCDC88A-206ENST00000430086 RUBCNLQ9H714 662 aa10.76□□□□□ -0.69
CCDC88A-206ENST00000430086 PTCD1O75127 700 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-206ENST00000430086 NFX1Q12986 1120 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-206ENST00000430086 B4GALNT3Q6L9W6 998 aa10.75□□□□□ -0.69
CCDC88A-206ENST00000430086 PHLDB3Q6NSJ2 640 aa10.75□□□□□ -0.69
CCDC88A-206ENST00000430086 NLRP8Q86W28 1048 aa10.75□□□□□ -0.69
CCDC88A-206ENST00000430086 ZNF837Q96EG3 531 aaPredicted RBP10.75□□□□□ -0.69
CCDC88A-206ENST00000430086 A0A1W2PNR3 127 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 THBS1P07996 1170 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 VSIG8P0DPA2 414 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 RTN1Q16799 776 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 ARSJQ5FYB0 599 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 EFHC2Q5JST6 749 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 RHPN1Q8TCX5 695 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 MYO19Q96H55 970 aa10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 NUCKS1Q9H1E3 243 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-206ENST00000430086 BICDL1Q6ZP65 573 aa10.73□□□□□ -0.69
CCDC88A-206ENST00000430086 SV2AQ7L0J3 742 aa10.73□□□□□ -0.69
CCDC88A-206ENST00000430086 NGLY1Q96IV0 654 aa10.73□□□□□ -0.69
CCDC88A-206ENST00000430086 QTRT2Q9H974 415 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-206ENST00000430086 VWA5B2Q8N398 1253 aa10.72□□□□□ -0.69
CCDC88A-206ENST00000430086 CDC14CA4D256 554 aa10.71□□□□□ -0.69
CCDC88A-206ENST00000430086 UBAP2LQ14157 1087 aaKnown RBP10.71□□□□□ -0.69
CCDC88A-206ENST00000430086 MKNK1Q9BUB5 465 aa10.71□□□□□ -0.69
CCDC88A-206ENST00000430086 TRAIPQ9BWF2 469 aa10.71□□□□□ -0.69
CCDC88A-206ENST00000430086 HIF1AQ16665 826 aa10.7□□□□□ -0.7
CCDC88A-206ENST00000430086 FIGNL1Q6PIW4 674 aa10.7□□□□□ -0.7
CCDC88A-206ENST00000430086 CAPN12Q6ZSI9 719 aa10.7□□□□□ -0.7
CCDC88A-206ENST00000430086 IRF7Q92985 503 aa10.7□□□□□ -0.7
CCDC88A-206ENST00000430086 ANKIB1Q9P2G1 1089 aa10.7□□□□□ -0.7
CCDC88A-206ENST00000430086 ERBB4Q15303 1308 aa10.69□□□□□ -0.7
CCDC88A-206ENST00000430086 SAMD5Q5TGI4 173 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms