RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 VSIG10Q8N0Z9 540 aa20.14■□□□□ 0.81
SHOX2-202ENST00000425436 TJP1Q07157 1748 aa20.14■□□□□ 0.81
SHOX2-202ENST00000425436 IL16Q14005 1332 aa20.13■□□□□ 0.81
SHOX2-202ENST00000425436 SNRPA1P09661 255 aaKnown RBP20.12■□□□□ 0.81
SHOX2-202ENST00000425436 SMIM5Q71RC9 77 aa20.12■□□□□ 0.81
SHOX2-202ENST00000425436 USP16Q9Y5T5 823 aa20.12■□□□□ 0.81
SHOX2-202ENST00000425436 ZNF831Q5JPB2 1677 aa20.12■□□□□ 0.81
SHOX2-202ENST00000425436 GIGYF1O75420 1035 aaPredicted RBP20.12■□□□□ 0.81
SHOX2-202ENST00000425436 AKT1S1Q96B36 256 aa20.12■□□□□ 0.81
SHOX2-202ENST00000425436 STK32BQ9NY57 414 aa20.12■□□□□ 0.81
SHOX2-202ENST00000425436 C4BP0C0L5 1744 aa20.11■□□□□ 0.81
SHOX2-202ENST00000425436 COL5A3P25940 1745 aaPredicted RBP20.11■□□□□ 0.81
SHOX2-202ENST00000425436 CYP19A1P11511 503 aaPredicted RBP20.11■□□□□ 0.81
SHOX2-202ENST00000425436 SLC15A2Q16348 729 aa20.11■□□□□ 0.81
SHOX2-202ENST00000425436 MYH14Q7Z406 1995 aaKnown RBP20.1■□□□□ 0.81
SHOX2-202ENST00000425436 PSDA5PKW4 1024 aaPredicted RBP20.1■□□□□ 0.81
SHOX2-202ENST00000425436 ELL2O00472 640 aaPredicted RBP20.1■□□□□ 0.81
SHOX2-202ENST00000425436 CRKLP46109 303 aaKnown RBP20.1■□□□□ 0.81
SHOX2-202ENST00000425436 R3HDM1Q15032 1099 aaKnown RBP20.1■□□□□ 0.81
SHOX2-202ENST00000425436 INTS5Q6P9B9 1019 aaKnown RBP20.09■□□□□ 0.81
SHOX2-202ENST00000425436 AMIGO3Q86WK7 504 aa20.09■□□□□ 0.81
SHOX2-202ENST00000425436 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.09■□□□□ 0.81
SHOX2-202ENST00000425436 AK7Q96M32 723 aa20.09■□□□□ 0.81
SHOX2-202ENST00000425436 TEX13AQ9BXU3 409 aaPredicted RBP20.09■□□□□ 0.81
SHOX2-202ENST00000425436 TFCP2L1Q9NZI6 479 aa20.09■□□□□ 0.81
SHOX2-202ENST00000425436 STARD3NLO95772 234 aa20.08■□□□□ 0.81
SHOX2-202ENST00000425436 C8orf58Q8NAV2 365 aa20.08■□□□□ 0.81
SHOX2-202ENST00000425436 FANCIQ9NVI1 1328 aa20.08■□□□□ 0.81
SHOX2-202ENST00000425436 GNPATO15228 680 aa20.07■□□□□ 0.8
SHOX2-202ENST00000425436 A1BGP04217 495 aa20.07■□□□□ 0.8
SHOX2-202ENST00000425436 EIF2S2P20042 333 aaKnown RBP20.07■□□□□ 0.8
SHOX2-202ENST00000425436 PIP4K2AP48426 406 aaPredicted RBP20.07■□□□□ 0.8
SHOX2-202ENST00000425436 NECTIN2Q92692 538 aa20.07■□□□□ 0.8
SHOX2-202ENST00000425436 PHF14O94880 888 aa20.07■□□□□ 0.8
SHOX2-202ENST00000425436 CANXP27824 592 aaKnown RBP20.07■□□□□ 0.8
SHOX2-202ENST00000425436 RC3H1Q5TC82 1133 aaKnown RBP20.07■□□□□ 0.8
SHOX2-202ENST00000425436 MYH16Q9H6N6 1097 aa20.07■□□□□ 0.8
SHOX2-202ENST00000425436 CCDC87Q9NVE4 849 aa20.07■□□□□ 0.8
SHOX2-202ENST00000425436 CICQ96RK0 1608 aaPredicted RBP20.06■□□□□ 0.8
SHOX2-202ENST00000425436 HMGB2P26583 209 aaKnown RBP20.06■□□□□ 0.8
SHOX2-202ENST00000425436 TSPYL6Q8N831 410 aa20.06■□□□□ 0.8
SHOX2-202ENST00000425436 PDGFDQ9GZP0 370 aaPredicted RBP20.06■□□□□ 0.8
SHOX2-202ENST00000425436 ZBTB1Q9Y2K1 713 aa20.06■□□□□ 0.8
SHOX2-202ENST00000425436 CNTNAP4Q9C0A0 1308 aa20.06■□□□□ 0.8
SHOX2-202ENST00000425436 TUBGCP6Q96RT7 1819 aa20.05■□□□□ 0.8
SHOX2-202ENST00000425436 EXOSC9Q06265 439 aaKnown RBP20.04■□□□□ 0.8
SHOX2-202ENST00000425436 UBR3Q6ZT12 1888 aa20.03■□□□□ 0.8
SHOX2-202ENST00000425436 RPS6KA4O75676 772 aa20.03■□□□□ 0.8
SHOX2-202ENST00000425436 RTCBQ9Y3I0 505 aaKnown RBP20.03■□□□□ 0.8
SHOX2-202ENST00000425436 PNPLA7Q6ZV29 1317 aa20.02■□□□□ 0.8
SHOX2-202ENST00000425436 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.02■□□□□ 0.8
SHOX2-202ENST00000425436 COL23A1Q86Y22 540 aaPredicted RBP20.02■□□□□ 0.8
SHOX2-202ENST00000425436 ZNF330Q9Y3S2 320 aaPredicted RBP20.02■□□□□ 0.8
SHOX2-202ENST00000425436 LAMB4A4D0S4 1761 aa20.02■□□□□ 0.79
SHOX2-202ENST00000425436 NBPF26B4DH59 902 aa20.02■□□□□ 0.79
SHOX2-202ENST00000425436 NBPF10Q6P3W6 841 aaKnown RBP20.02■□□□□ 0.79
SHOX2-202ENST00000425436 NBPF15Q8N660 670 aa20.02■□□□□ 0.79
SHOX2-202ENST00000425436 TWISTNBQ3B726 338 aaPredicted RBP20.01■□□□□ 0.79
SHOX2-202ENST00000425436 TRAPPC3LQ5T215 181 aa20.01■□□□□ 0.79
SHOX2-202ENST00000425436 MYL6BP14649 208 aa20■□□□□ 0.79
SHOX2-202ENST00000425436 HDGFL1Q5TGJ6 251 aa20■□□□□ 0.79
SHOX2-202ENST00000425436 ARHGEF1Q92888 912 aaKnown RBP20■□□□□ 0.79
SHOX2-202ENST00000425436 CCDC136Q96JN2 1154 aa20■□□□□ 0.79
SHOX2-202ENST00000425436 SOS1Q07889 1333 aaPredicted RBP19.99■□□□□ 0.79
SHOX2-202ENST00000425436 TCERG1O14776 1098 aaKnown RBP19.99■□□□□ 0.79
SHOX2-202ENST00000425436 ANXA1P04083 346 aa19.99■□□□□ 0.79
SHOX2-202ENST00000425436 SSFA2P28290 1259 aa19.99■□□□□ 0.79
SHOX2-202ENST00000425436 ARXQ96QS3 562 aa19.99■□□□□ 0.79
SHOX2-202ENST00000425436 HOXB7P09629 217 aa19.98■□□□□ 0.79
SHOX2-202ENST00000425436 CT47B1P0C2W7 299 aaPredicted RBP19.98■□□□□ 0.79
SHOX2-202ENST00000425436 EIF5P55010 431 aaKnown RBP19.98■□□□□ 0.79
SHOX2-202ENST00000425436 VAMP4O75379 141 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 IL6STP40189 918 aaPredicted RBP19.97■□□□□ 0.79
SHOX2-202ENST00000425436 PDIA6Q15084 440 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 PROSER3Q2NL68 480 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 QSER1Q2KHR3 1735 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 B4GALNT3Q6L9W6 998 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 FLAD1Q8NFF5 587 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 CHPF2Q9P2E5 772 aa19.97■□□□□ 0.79
SHOX2-202ENST00000425436 RFC4P35249 363 aa19.96■□□□□ 0.79
SHOX2-202ENST00000425436 TBC1D2BQ9UPU7 963 aa19.96■□□□□ 0.79
SHOX2-202ENST00000425436 ZBTB7AO95365 584 aa19.95■□□□□ 0.78
SHOX2-202ENST00000425436 NPM2Q86SE8 214 aaKnown RBP19.95■□□□□ 0.78
SHOX2-202ENST00000425436 SRP68Q9UHB9 627 aaKnown RBP19.95■□□□□ 0.78
SHOX2-202ENST00000425436 COL15A1P39059 1388 aa19.95■□□□□ 0.78
SHOX2-202ENST00000425436 CASZ1Q86V15 1759 aa19.93■□□□□ 0.78
SHOX2-202ENST00000425436 CCDC30Q5VVM6 783 aa19.93■□□□□ 0.78
SHOX2-202ENST00000425436 DDX21Q9NR30 783 aaKnown RBP eCLIP19.93■□□□□ 0.78
SHOX2-202ENST00000425436 DBF4Q9UBU7 674 aaPredicted RBP19.93■□□□□ 0.78
SHOX2-202ENST00000425436 MSL1Q68DK7 614 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 LRP10Q7Z4F1 713 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 EXOC6Q8TAG9 804 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 ATF5Q9Y2D1 282 aaPredicted RBP19.92■□□□□ 0.78
SHOX2-202ENST00000425436 C4AP0C0L4 1744 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 ERBB4Q15303 1308 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 A0A087WZG4 1122 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 ZPR1O75312 459 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 AIMP1Q12904 312 aaKnown RBP19.92■□□□□ 0.78
SHOX2-202ENST00000425436 USPL1Q5W0Q7 1092 aa19.92■□□□□ 0.78
SHOX2-202ENST00000425436 TTLL7Q6ZT98 887 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms