RNA–Protein interactions for RNA: ENST00000418336.6

PKNOX1-202, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-202ENST00000418336 RFC4P35249 363 aa27.31■■□□□ 1.96
PKNOX1-202ENST00000418336 TAF7Q15545 349 aaPredicted RBP27.31■■□□□ 1.96
PKNOX1-202ENST00000418336 COL15A1P39059 1388 aa27.31■■□□□ 1.96
PKNOX1-202ENST00000418336 MMP10P09238 476 aa27.3■■□□□ 1.96
PKNOX1-202ENST00000418336 TMPOP42166 694 aaKnown RBP27.3■■□□□ 1.96
PKNOX1-202ENST00000418336 EIF5P55010 431 aaKnown RBP27.3■■□□□ 1.96
PKNOX1-202ENST00000418336 MAPK8IP3Q9UPT6 1336 aa27.3■■□□□ 1.96
PKNOX1-202ENST00000418336 NLGN1Q8N2Q7 840 aa27.29■■□□□ 1.96
PKNOX1-202ENST00000418336 MIS18AQ9NYP9 233 aa27.29■■□□□ 1.96
PKNOX1-202ENST00000418336 CD2APQ9Y5K6 639 aa27.29■■□□□ 1.96
PKNOX1-202ENST00000418336 FKBP8Q14318 412 aa27.28■■□□□ 1.96
PKNOX1-202ENST00000418336 CCDC146Q8IYE0 955 aa27.28■■□□□ 1.96
PKNOX1-202ENST00000418336 TEX13AQ9BXU3 409 aaPredicted RBP27.28■■□□□ 1.96
PKNOX1-202ENST00000418336 BCL2L12Q9HB09 334 aa27.28■■□□□ 1.96
PKNOX1-202ENST00000418336 USP16Q9Y5T5 823 aa27.28■■□□□ 1.96
PKNOX1-202ENST00000418336 NEFMP07197 916 aa27.27■■□□□ 1.96
PKNOX1-202ENST00000418336 STARD3NLO95772 234 aa27.26■■□□□ 1.95
PKNOX1-202ENST00000418336 RIPK4P57078 832 aa27.26■■□□□ 1.95
PKNOX1-202ENST00000418336 RUNDC1Q96C34 613 aa27.26■■□□□ 1.95
PKNOX1-202ENST00000418336 C10orf71Q711Q0 1435 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 A1BGP04217 495 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 DDR1Q08345 913 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 USPL1Q5W0Q7 1092 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 KLHL34Q8N239 644 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 NARFQ9UHQ1 456 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 TRIM35Q9UPQ4 493 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 LAMB4A4D0S4 1761 aa27.25■■□□□ 1.95
PKNOX1-202ENST00000418336 SCN7AQ01118 1682 aa27.24■■□□□ 1.95
PKNOX1-202ENST00000418336 CANXP27824 592 aaKnown RBP27.24■■□□□ 1.95
PKNOX1-202ENST00000418336 TM4SF1P30408 202 aa27.24■■□□□ 1.95
PKNOX1-202ENST00000418336 WDR43Q15061 677 aaKnown RBP eCLIP27.23■■□□□ 1.95
PKNOX1-202ENST00000418336 RRP7AQ9Y3A4 280 aaKnown RBP27.23■■□□□ 1.95
PKNOX1-202ENST00000418336 NRXN2Q9P2S2 1712 aa27.22■■□□□ 1.95
PKNOX1-202ENST00000418336 SNRPA1P09661 255 aaKnown RBP27.22■■□□□ 1.95
PKNOX1-202ENST00000418336 IL6STP40189 918 aaPredicted RBP27.21■■□□□ 1.95
PKNOX1-202ENST00000418336 EIF4A1P60842 406 aaKnown RBP27.21■■□□□ 1.95
PKNOX1-202ENST00000418336 PNISRQ8TF01 805 aaKnown RBP27.21■■□□□ 1.95
PKNOX1-202ENST00000418336 PXDNLA1KZ92 1463 aa27.2■■□□□ 1.95
PKNOX1-202ENST00000418336 NBPF26B4DH59 902 aa27.2■■□□□ 1.94
PKNOX1-202ENST00000418336 POLRMTO00411 1230 aaKnown RBP27.2■■□□□ 1.94
PKNOX1-202ENST00000418336 YBX3P16989 372 aaKnown RBP eCLIP27.2■■□□□ 1.94
PKNOX1-202ENST00000418336 NBPF10Q6P3W6 841 aaKnown RBP27.2■■□□□ 1.94
PKNOX1-202ENST00000418336 NBPF15Q8N660 670 aa27.2■■□□□ 1.94
PKNOX1-202ENST00000418336 BCORQ6W2J9 1755 aa27.2■■□□□ 1.94
PKNOX1-202ENST00000418336 GIGYF1O75420 1035 aaPredicted RBP27.18■■□□□ 1.94
PKNOX1-202ENST00000418336 PIP4K2AP48426 406 aaPredicted RBP27.18■■□□□ 1.94
PKNOX1-202ENST00000418336 AFDNP55196 1824 aaKnown RBP27.18■■□□□ 1.94
PKNOX1-202ENST00000418336 ZPR1O75312 459 aa27.17■■□□□ 1.94
PKNOX1-202ENST00000418336 NFIXQ14938 502 aa27.16■■□□□ 1.94
PKNOX1-202ENST00000418336 N4BP2Q86UW6 1770 aaPredicted RBP27.15■■□□□ 1.94
PKNOX1-202ENST00000418336 BABAM1Q9NWV8 329 aa27.15■■□□□ 1.94
PKNOX1-202ENST00000418336 BRCA1P38398 1863 aaKnown RBP27.15■■□□□ 1.94
PKNOX1-202ENST00000418336 A0A087WZG4 1122 aa27.14■■□□□ 1.94
PKNOX1-202ENST00000418336 CAMTA2O94983 1202 aa27.14■■□□□ 1.94
PKNOX1-202ENST00000418336 LMOD3Q0VAK6 560 aa27.14■■□□□ 1.94
PKNOX1-202ENST00000418336 NEUROD2Q15784 382 aa27.14■■□□□ 1.94
PKNOX1-202ENST00000418336 TBC1D2BQ9UPU7 963 aa27.14■■□□□ 1.94
PKNOX1-202ENST00000418336 PARP3Q9Y6F1 533 aa27.14■■□□□ 1.94
PKNOX1-202ENST00000418336 CHL1O00533 1208 aa27.12■■□□□ 1.93
PKNOX1-202ENST00000418336 KCNA3P22001 575 aa27.11■■□□□ 1.93
PKNOX1-202ENST00000418336 GPR162Q16538 588 aa27.11■■□□□ 1.93
PKNOX1-202ENST00000418336 TSPYL4Q9UJ04 414 aa27.11■■□□□ 1.93
PKNOX1-202ENST00000418336 CHD4Q14839 1912 aa27.1■■□□□ 1.93
PKNOX1-202ENST00000418336 DCAF8L1A6NGE4 600 aa27.1■■□□□ 1.93
PKNOX1-202ENST00000418336 APAF1O14727 1248 aa27.1■■□□□ 1.93
PKNOX1-202ENST00000418336 TGFB2P61812 414 aa27.1■■□□□ 1.93
PKNOX1-202ENST00000418336 TBC1D9BQ66K14 1250 aa27.09■■□□□ 1.93
PKNOX1-202ENST00000418336 ANP32CO43423 234 aa27.08■■□□□ 1.93
PKNOX1-202ENST00000418336 LRP10Q7Z4F1 713 aa27.08■■□□□ 1.93
PKNOX1-202ENST00000418336 ZNF853P0CG23 659 aa27.07■■□□□ 1.92
PKNOX1-202ENST00000418336 DZIP3Q86Y13 1208 aaKnown RBP27.07■■□□□ 1.92
PKNOX1-202ENST00000418336 ZNF330Q9Y3S2 320 aaPredicted RBP27.07■■□□□ 1.92
PKNOX1-202ENST00000418336 CARMIL3Q8ND23 1372 aa27.07■■□□□ 1.92
PKNOX1-202ENST00000418336 A0A0G2JLW4 131 aa27.06■■□□□ 1.92
PKNOX1-202ENST00000418336 DPEP1P16444 411 aa27.06■■□□□ 1.92
PKNOX1-202ENST00000418336 PDIA6Q15084 440 aa27.06■■□□□ 1.92
PKNOX1-202ENST00000418336 ANKRD31Q8N7Z5 1873 aa27.05■■□□□ 1.92
PKNOX1-202ENST00000418336 SERPINB2P05120 415 aa27.05■■□□□ 1.92
PKNOX1-202ENST00000418336 YY1P25490 414 aa27.05■■□□□ 1.92
PKNOX1-202ENST00000418336 KRT24Q2M2I5 525 aa27.05■■□□□ 1.92
PKNOX1-202ENST00000418336 PELP1Q8IZL8 1130 aaKnown RBP27.04■■□□□ 1.92
PKNOX1-202ENST00000418336 RGL2O15211 777 aa27.03■■□□□ 1.92
PKNOX1-202ENST00000418336 WWC3Q9ULE0 1092 aa27.03■■□□□ 1.92
PKNOX1-202ENST00000418336 DLEC1Q9Y238 1755 aa27.02■■□□□ 1.92
PKNOX1-202ENST00000418336 MRS2Q9HD23 443 aa27.02■■□□□ 1.92
PKNOX1-202ENST00000418336 GRIN3BO60391 1043 aa27.01■■□□□ 1.91
PKNOX1-202ENST00000418336 CLEC4GQ6UXB4 293 aa27.01■■□□□ 1.91
PKNOX1-202ENST00000418336 BICDL1Q6ZP65 573 aa27.01■■□□□ 1.91
PKNOX1-202ENST00000418336 CFAP44Q96MT7 982 aa27.01■■□□□ 1.91
PKNOX1-202ENST00000418336 ERBB4Q15303 1308 aa27■■□□□ 1.91
PKNOX1-202ENST00000418336 HLFQ16534 295 aa26.99■■□□□ 1.91
PKNOX1-202ENST00000418336 ARFGEF1Q9Y6D6 1849 aa26.98■■□□□ 1.91
PKNOX1-202ENST00000418336 CHRNA5P30532 468 aa26.98■■□□□ 1.91
PKNOX1-202ENST00000418336 PROSER3Q2NL68 480 aa26.98■■□□□ 1.91
PKNOX1-202ENST00000418336 PRR5LQ6MZQ0 368 aa26.98■■□□□ 1.91
PKNOX1-202ENST00000418336 TTLL7Q6ZT98 887 aa26.98■■□□□ 1.91
PKNOX1-202ENST00000418336 MBIPQ9NS73 344 aa26.98■■□□□ 1.91
PKNOX1-202ENST00000418336 COL11A2P13942 1736 aaPredicted RBP26.97■■□□□ 1.91
PKNOX1-202ENST00000418336 NUP98P52948 1817 aa26.97■■□□□ 1.91
PKNOX1-202ENST00000418336 CCDC27Q2M243 656 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms