RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TSPAN10Q9H1Z9 355 aaPredicted RBP8.18□□□□□ -1.1
VPS54-204ENST00000416400 TIMMDC1Q9NPL8 285 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS54-204ENST00000416400 ATAD2Q6PL18 1390 aa8.18□□□□□ -1.1
VPS54-204ENST00000416400 SERTM1A2A2V5 107 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 PRMT3O60678 531 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 IGFBP4P22692 258 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 PLA2G4AP47712 749 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 EPHA4P54764 986 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 NBPF1Q3BBV0 1214 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 C4orf17Q53FE4 359 aa8.17□□□□□ -1.1
VPS54-204ENST00000416400 CLP1Q92989 425 aaKnown RBP8.17□□□□□ -1.1
VPS54-204ENST00000416400 FOXK2Q01167 660 aa8.16□□□□□ -1.1
VPS54-204ENST00000416400 PRIMPOLQ96LW4 560 aa8.16□□□□□ -1.1
VPS54-204ENST00000416400 GZF1Q9H116 711 aaPredicted RBP8.16□□□□□ -1.1
VPS54-204ENST00000416400 TATP17735 454 aaPredicted RBP8.15□□□□□ -1.1
VPS54-204ENST00000416400 ATP2B4P23634 1241 aa8.15□□□□□ -1.1
VPS54-204ENST00000416400 NOS2P35228 1153 aa8.15□□□□□ -1.1
VPS54-204ENST00000416400 PTSQ03393 145 aa8.15□□□□□ -1.1
VPS54-204ENST00000416400 TEAD4Q15561 434 aa8.15□□□□□ -1.1
VPS54-204ENST00000416400 GAS2L1Q99501 681 aaPredicted RBP8.15□□□□□ -1.1
VPS54-204ENST00000416400 IQSEC3Q9UPP2 1182 aaPredicted RBP8.15□□□□□ -1.1
VPS54-204ENST00000416400 A0A1B0GTH6 734 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 POTECB2RU33 542 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 FOXO3O43524 673 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 FAM69CQ0P6D2 419 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 TMCO4Q5TGY1 634 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 PGBD3Q8N328 593 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 L3MBTL2Q969R5 705 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 PARP3Q9Y6F1 533 aa8.14□□□□□ -1.11
VPS54-204ENST00000416400 WEE1P30291 646 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 RIPOR1Q6ZS17 1223 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 STAG2Q8N3U4 1231 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 NEUROD4Q9HD90 331 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 MTMR7Q9Y216 660 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 DYRK1BQ9Y463 629 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 USP3Q9Y6I4 520 aa8.13□□□□□ -1.11
VPS54-204ENST00000416400 BICDL1Q6ZP65 573 aa8.12□□□□□ -1.11
VPS54-204ENST00000416400 C1orf216Q8TAB5 229 aa8.12□□□□□ -1.11
VPS54-204ENST00000416400 CXXC1Q9P0U4 656 aaPredicted RBP8.12□□□□□ -1.11
VPS54-204ENST00000416400 C21orf2O43822 256 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 F11P03951 625 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 ARSJQ5FYB0 599 aaPredicted RBP8.11□□□□□ -1.11
VPS54-204ENST00000416400 CCDC155Q8N6L0 562 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 NGLY1Q96IV0 654 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 C2orf49Q9BVC5 232 aaPredicted RBP8.11□□□□□ -1.11
VPS54-204ENST00000416400 GPAMQ9HCL2 828 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 ZDHHC3Q9NYG2 299 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 HCN4Q9Y3Q4 1203 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 GJA3Q9Y6H8 435 aa8.11□□□□□ -1.11
VPS54-204ENST00000416400 SLC35F4A4IF30 521 aa8.1□□□□□ -1.11
VPS54-204ENST00000416400 H7C1W4 665 aa8.1□□□□□ -1.11
VPS54-204ENST00000416400 PTCD1O75127 700 aaKnown RBP8.1□□□□□ -1.11
VPS54-204ENST00000416400 MSX1P28360 303 aa8.1□□□□□ -1.11
VPS54-204ENST00000416400 IVNS1ABPQ9Y6Y0 642 aa8.1□□□□□ -1.11
VPS54-204ENST00000416400 EML1O00423 815 aa8.09□□□□□ -1.11
VPS54-204ENST00000416400 OCLNQ16625 522 aa8.09□□□□□ -1.11
VPS54-204ENST00000416400 EFHC2Q5JST6 749 aa8.09□□□□□ -1.11
VPS54-204ENST00000416400 RHPN1Q8TCX5 695 aa8.09□□□□□ -1.11
VPS54-204ENST00000416400 ZDHHC1Q8WTX9 485 aa8.09□□□□□ -1.11
VPS54-204ENST00000416400 SSFA2P28290 1259 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 HIRAP54198 1017 aaPredicted RBP8.08□□□□□ -1.12
VPS54-204ENST00000416400 FKBP5Q13451 457 aaPredicted RBP8.08□□□□□ -1.12
VPS54-204ENST00000416400 HIF1AQ16665 826 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 C1orf53Q5VUE5 145 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 ALDH16A1Q8IZ83 802 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 SLC16A10Q8TF71 515 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 MKNK1Q9BUB5 465 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 PHACTR1Q9C0D0 580 aa8.08□□□□□ -1.12
VPS54-204ENST00000416400 NXF1Q9UBU9 619 aaKnown RBP8.08□□□□□ -1.12
VPS54-204ENST00000416400 SENP3-EIF4A1A0A087X0R7 540 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 TXLNAP40222 546 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 RANGAP1P46060 587 aaPredicted RBP8.07□□□□□ -1.12
VPS54-204ENST00000416400 MFAP1P55081 439 aaKnown RBP8.07□□□□□ -1.12
VPS54-204ENST00000416400 FOXR1Q6PIV2 292 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 ZNF295-AS1Q8N0V1 137 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 GMCL1Q96IK5 515 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 RUBCNLQ9H714 662 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 ANKIB1Q9P2G1 1089 aa8.07□□□□□ -1.12
VPS54-204ENST00000416400 CDC14CA4D256 554 aa8.06□□□□□ -1.12
VPS54-204ENST00000416400 PPFIA3O75145 1194 aa8.06□□□□□ -1.12
VPS54-204ENST00000416400 ITGA6P23229 1130 aa8.06□□□□□ -1.12
VPS54-204ENST00000416400 SH3PXD2AQ5TCZ1 1133 aa8.06□□□□□ -1.12
VPS54-204ENST00000416400 NPM2Q86SE8 214 aaKnown RBP8.06□□□□□ -1.12
VPS54-204ENST00000416400 COL26A1Q96A83 441 aa8.06□□□□□ -1.12
VPS54-204ENST00000416400 GPC6Q9Y625 555 aaPredicted RBP8.06□□□□□ -1.12
VPS54-204ENST00000416400 ARID4AP29374 1257 aaPredicted RBP8.05□□□□□ -1.12
VPS54-204ENST00000416400 LBRQ14739 615 aaKnown RBP8.05□□□□□ -1.12
VPS54-204ENST00000416400 RTN1Q16799 776 aa8.05□□□□□ -1.12
VPS54-204ENST00000416400 NPAS3Q8IXF0 933 aa8.05□□□□□ -1.12
VPS54-204ENST00000416400 NUCKS1Q9H1E3 243 aaKnown RBP8.05□□□□□ -1.12
VPS54-204ENST00000416400 SLAIN2Q9P270 581 aa8.05□□□□□ -1.12
VPS54-204ENST00000416400 GNEQ9Y223 722 aaKnown RBP8.05□□□□□ -1.12
VPS54-204ENST00000416400 A0A1W2PNR3 127 aa8.04□□□□□ -1.12
VPS54-204ENST00000416400 NAA30Q147X3 362 aaPredicted RBP8.04□□□□□ -1.12
VPS54-204ENST00000416400 FIGNL1Q6PIW4 674 aa8.04□□□□□ -1.12
VPS54-204ENST00000416400 POTEAQ6S8J7 498 aa8.04□□□□□ -1.12
VPS54-204ENST00000416400 SV2AQ7L0J3 742 aa8.04□□□□□ -1.12
VPS54-204ENST00000416400 TRIM22Q8IYM9 498 aa8.04□□□□□ -1.12
VPS54-204ENST00000416400 CCER1Q8TC90 406 aaPredicted RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms