RNA–Protein interactions for RNA: ENST00000381140.8

GTF3A-201, Transcript of general transcription factor IIIA, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-201ENST00000381140 LAMB4A4D0S4 1761 aa25.34■■□□□ 1.65
GTF3A-201ENST00000381140 RPS6KA4O75676 772 aa25.33■■□□□ 1.65
GTF3A-201ENST00000381140 SNRPA1P09661 255 aaKnown RBP25.33■■□□□ 1.65
GTF3A-201ENST00000381140 TEX13AQ9BXU3 409 aaPredicted RBP25.33■■□□□ 1.65
GTF3A-201ENST00000381140 MTFR1LQ9H019 292 aa25.33■■□□□ 1.65
GTF3A-201ENST00000381140 CANXP27824 592 aaKnown RBP25.32■■□□□ 1.64
GTF3A-201ENST00000381140 TRAPPC3LQ5T215 181 aa25.32■■□□□ 1.64
GTF3A-201ENST00000381140 MSL1Q68DK7 614 aa25.32■■□□□ 1.64
GTF3A-201ENST00000381140 EIF4A1P60842 406 aaKnown RBP25.31■■□□□ 1.64
GTF3A-201ENST00000381140 SLC16A10Q8TF71 515 aa25.31■■□□□ 1.64
GTF3A-201ENST00000381140 ZBTB1Q9Y2K1 713 aa25.31■■□□□ 1.64
GTF3A-201ENST00000381140 USP16Q9Y5T5 823 aa25.31■■□□□ 1.64
GTF3A-201ENST00000381140 ARHGEF1Q92888 912 aaKnown RBP25.3■■□□□ 1.64
GTF3A-201ENST00000381140 ZNF330Q9Y3S2 320 aaPredicted RBP25.3■■□□□ 1.64
GTF3A-201ENST00000381140 A1BGP04217 495 aa25.29■■□□□ 1.64
GTF3A-201ENST00000381140 CALD1Q05682 793 aaKnown RBP25.29■■□□□ 1.64
GTF3A-201ENST00000381140 BABAM1Q9NWV8 329 aa25.29■■□□□ 1.64
GTF3A-201ENST00000381140 PPP1R1BQ9UD71 204 aaPredicted RBP25.29■■□□□ 1.64
GTF3A-201ENST00000381140 CHL1O00533 1208 aa25.28■■□□□ 1.64
GTF3A-201ENST00000381140 RFC4P35249 363 aa25.28■■□□□ 1.64
GTF3A-201ENST00000381140 SOS1Q07889 1333 aaPredicted RBP25.27■■□□□ 1.64
GTF3A-201ENST00000381140 ADRA2BP18089 450 aa25.27■■□□□ 1.64
GTF3A-201ENST00000381140 PIP4K2AP48426 406 aaPredicted RBP25.27■■□□□ 1.64
GTF3A-201ENST00000381140 WWC1Q8IX03 1113 aa25.27■■□□□ 1.64
GTF3A-201ENST00000381140 COL24A1Q17RW2 1714 aa25.26■■□□□ 1.63
GTF3A-201ENST00000381140 GIGYF1O75420 1035 aaPredicted RBP25.26■■□□□ 1.63
GTF3A-201ENST00000381140 CFAP44Q96MT7 982 aa25.26■■□□□ 1.63
GTF3A-201ENST00000381140 PTGER2P43116 358 aa25.25■■□□□ 1.63
GTF3A-201ENST00000381140 CCDC27Q2M243 656 aa25.25■■□□□ 1.63
GTF3A-201ENST00000381140 COL15A1P39059 1388 aa25.24■■□□□ 1.63
GTF3A-201ENST00000381140 POLD1P28340 1107 aa25.24■■□□□ 1.63
GTF3A-201ENST00000381140 GNAI1P63096 354 aa25.24■■□□□ 1.63
GTF3A-201ENST00000381140 MBIPQ9NS73 344 aa25.24■■□□□ 1.63
GTF3A-201ENST00000381140 IFT57Q9NWB7 429 aa25.24■■□□□ 1.63
GTF3A-201ENST00000381140 SRP68Q9UHB9 627 aaKnown RBP25.24■■□□□ 1.63
GTF3A-201ENST00000381140 KRT24Q2M2I5 525 aa25.23■■□□□ 1.63
GTF3A-201ENST00000381140 ARXQ96QS3 562 aa25.23■■□□□ 1.63
GTF3A-201ENST00000381140 NPM2Q86SE8 214 aaKnown RBP25.22■■□□□ 1.63
GTF3A-201ENST00000381140 ZNF853P0CG23 659 aa25.21■■□□□ 1.63
GTF3A-201ENST00000381140 ZPR1O75312 459 aa25.2■■□□□ 1.63
GTF3A-201ENST00000381140 EIF2S2P20042 333 aaKnown RBP25.2■■□□□ 1.63
GTF3A-201ENST00000381140 SGIP1Q9BQI5 828 aa25.2■■□□□ 1.63
GTF3A-201ENST00000381140 IL6STP40189 918 aaPredicted RBP25.19■■□□□ 1.62
GTF3A-201ENST00000381140 EIF5P55010 431 aaKnown RBP25.19■■□□□ 1.62
GTF3A-201ENST00000381140 KLHL34Q8N239 644 aa25.19■■□□□ 1.62
GTF3A-201ENST00000381140 NECTIN2Q92692 538 aa25.19■■□□□ 1.62
GTF3A-201ENST00000381140 USP42Q9H9J4 1324 aaKnown RBP25.19■■□□□ 1.62
GTF3A-201ENST00000381140 SRCAPQ6ZRS2 3230 aa25.19■■□□□ 1.62
GTF3A-201ENST00000381140 NCBP3Q53F19 620 aaKnown RBP25.18■■□□□ 1.62
GTF3A-201ENST00000381140 A0A087WZG4 1122 aa25.18■■□□□ 1.62
GTF3A-201ENST00000381140 NBPF26B4DH59 902 aa25.18■■□□□ 1.62
GTF3A-201ENST00000381140 GYS1P13807 737 aa25.18■■□□□ 1.62
GTF3A-201ENST00000381140 USPL1Q5W0Q7 1092 aa25.18■■□□□ 1.62
GTF3A-201ENST00000381140 NBPF10Q6P3W6 841 aaKnown RBP25.18■■□□□ 1.62
GTF3A-201ENST00000381140 NBPF15Q8N660 670 aa25.18■■□□□ 1.62
GTF3A-201ENST00000381140 TSR2Q969E8 191 aaKnown RBP25.18■■□□□ 1.62
GTF3A-201ENST00000381140 TBC1D2BQ9UPU7 963 aa25.18■■□□□ 1.62
GTF3A-201ENST00000381140 NGEFQ8N5V2 710 aa25.17■■□□□ 1.62
GTF3A-201ENST00000381140 MYL6BP14649 208 aa25.16■■□□□ 1.62
GTF3A-201ENST00000381140 NARFQ9UHQ1 456 aa25.16■■□□□ 1.62
GTF3A-201ENST00000381140 SCN7AQ01118 1682 aa25.16■■□□□ 1.62
GTF3A-201ENST00000381140 ELL2O00472 640 aaPredicted RBP25.15■■□□□ 1.62
GTF3A-201ENST00000381140 DUSP27Q5VZP5 1158 aa25.15■■□□□ 1.62
GTF3A-201ENST00000381140 WDR63Q8IWG1 891 aa25.15■■□□□ 1.62
GTF3A-201ENST00000381140 NLGN1Q8N2Q7 840 aa25.15■■□□□ 1.62
GTF3A-201ENST00000381140 IL16Q14005 1332 aa25.14■■□□□ 1.62
GTF3A-201ENST00000381140 MMP10P09238 476 aa25.14■■□□□ 1.61
GTF3A-201ENST00000381140 FKBP8Q14318 412 aa25.14■■□□□ 1.61
GTF3A-201ENST00000381140 BCORQ6W2J9 1755 aa25.14■■□□□ 1.61
GTF3A-201ENST00000381140 DZIP3Q86Y13 1208 aaKnown RBP25.13■■□□□ 1.61
GTF3A-201ENST00000381140 ANXA1P04083 346 aa25.11■■□□□ 1.61
GTF3A-201ENST00000381140 HDGFL1Q5TGJ6 251 aa25.11■■□□□ 1.61
GTF3A-201ENST00000381140 C8orf58Q8NAV2 365 aa25.11■■□□□ 1.61
GTF3A-201ENST00000381140 FHDC1Q9C0D6 1143 aaPredicted RBP25.11■■□□□ 1.61
GTF3A-201ENST00000381140 BICDL1Q6ZP65 573 aa25.09■■□□□ 1.61
GTF3A-201ENST00000381140 BCL2L12Q9HB09 334 aa25.09■■□□□ 1.61
GTF3A-201ENST00000381140 ERBB4Q15303 1308 aa25.09■■□□□ 1.61
GTF3A-201ENST00000381140 FANCIQ9NVI1 1328 aa25.09■■□□□ 1.61
GTF3A-201ENST00000381140 PROSER3Q2NL68 480 aa25.08■■□□□ 1.61
GTF3A-201ENST00000381140 SPINK5Q9NQ38 1064 aaPredicted RBP25.08■■□□□ 1.61
GTF3A-201ENST00000381140 PARP3Q9Y6F1 533 aa25.08■■□□□ 1.61
GTF3A-201ENST00000381140 NUP98P52948 1817 aa25.08■■□□□ 1.6
GTF3A-201ENST00000381140 CAMTA2O94983 1202 aa25.07■■□□□ 1.6
GTF3A-201ENST00000381140 HOXB7P09629 217 aa25.07■■□□□ 1.6
GTF3A-201ENST00000381140 AFDNP55196 1824 aaKnown RBP25.07■■□□□ 1.6
GTF3A-201ENST00000381140 PDIA6Q15084 440 aa25.06■■□□□ 1.6
GTF3A-201ENST00000381140 TSPYL6Q8N831 410 aa25.06■■□□□ 1.6
GTF3A-201ENST00000381140 CHPF2Q9P2E5 772 aa25.06■■□□□ 1.6
GTF3A-201ENST00000381140 ZNF521Q96K83 1311 aa25.06■■□□□ 1.6
GTF3A-201ENST00000381140 DDR1Q08345 913 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 GOLGA2Q08379 1002 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 NFIXQ14938 502 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 KIF6Q6ZMV9 814 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 TTLL7Q6ZT98 887 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 MYH16Q9H6N6 1097 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 SYT17Q9BSW7 474 aa25.05■■□□□ 1.6
GTF3A-201ENST00000381140 AIMP1Q12904 312 aaKnown RBP25.04■■□□□ 1.6
GTF3A-201ENST00000381140 TBC1D9BQ66K14 1250 aa25.04■■□□□ 1.6
GTF3A-201ENST00000381140 DDX21Q9NR30 783 aaKnown RBP eCLIP25.04■■□□□ 1.6
GTF3A-201ENST00000381140 TM4SF1P30408 202 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms