RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 STRN4Q9NRL3 753 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 LRP2BPQ9P2M1 347 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 IGF1RP08069 1367 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 USO1O60763 962 aaKnown RBP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 TNNT1P13805 278 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 SREK1Q8WXA9 508 aaKnown RBP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 ZNF287Q9HBT7 754 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 TSNARE1Q96NA8 513 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 PSMD1Q99460 953 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 IKBKGQ9Y6K9 419 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 GTF2F1P35269 517 aaKnown RBP eCLIP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 LRPPRCP42704 1394 aaKnown RBP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 HLTFQ14527 1009 aaKnown RBP eCLIP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 KIF4BQ2VIQ3 1234 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 DDX12PQ92771 950 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 TMEM266Q2M3C6 531 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 SMARCC1Q92922 1105 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 SRRTQ9BXP5 876 aaKnown RBP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 KLHL40Q2TBA0 621 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 PPP4R3BQ5MIZ7 849 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 TMX1Q9H3N1 280 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 ARAP1Q96P48 1450 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 FSD2A1L4K1 749 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 PABPN1LA6NDY0 278 aaKnown RBP8.43□□□□□ -1.06
SYNE1-208ENST00000367256 TUBBP07437 444 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 TATP17735 454 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-208ENST00000367256 MSL1Q68DK7 614 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 ZNF530Q6P9A1 599 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-208ENST00000367256 ESCO1Q5FWF5 840 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 CFTRP13569 1480 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 PPP1R14CQ8TAE6 165 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 CCDC196A0A1B0GTZ2 297 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 FERMT2Q96AC1 680 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 LIG1P18858 919 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 FAM114A1Q8IWE2 563 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 ZSCAN29Q8IWY8 852 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-208ENST00000367256 HOMER2Q9NSB8 354 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 SPG7Q9UQ90 795 aa8.43□□□□□ -1.06
SYNE1-208ENST00000367256 TMCO5BA8MYB1 307 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 PAFAH1B1P43034 410 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 XPCQ01831 940 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 FCHSD2O94868 740 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 SLFN5Q08AF3 891 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 IGHMBP2P38935 993 aaKnown RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 TDRD12Q587J7 1177 aaKnown RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 CUL5Q93034 780 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 RAB34Q9BZG1 259 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 NSRP1Q9H0G5 558 aaKnown RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 PTPN23Q9H3S7 1636 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 BTBD11A6QL63 1104 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 IDH1O75874 414 aaKnown RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 GLRX3O76003 335 aaKnown RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 MX1P20591 662 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 LMAN1P49257 510 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 ANKS4BQ8N8V4 417 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 CUL7Q14999 1698 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 URI1O94763 535 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-208ENST00000367256 SERPINA10Q9UK55 444 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 JADE2Q9NQC1 790 aa8.42□□□□□ -1.06
SYNE1-208ENST00000367256 RPGRIP1LQ68CZ1 1315 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 PRPF40BQ6NWY9 871 aaKnown RBP8.41□□□□□ -1.06
SYNE1-208ENST00000367256 DNAAF4Q8WXU2 420 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 FERMT1Q9BQL6 677 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 EHMT1Q9H9B1 1298 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 A0A087WZG4 1122 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 HSPA4P34932 840 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 TMOD2Q9NZR1 351 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 UBE2HP62256 183 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 MRPS9P82933 396 aaKnown RBP8.41□□□□□ -1.06
SYNE1-208ENST00000367256 SPECC1Q5M775 1068 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 GOLGA8BA8MQT2 603 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 CETN1Q12798 172 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 TMC6Q7Z403 805 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 C8orf76Q96K31 380 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 TRERF1Q96PN7 1200 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 HSF2BPO75031 334 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 PRPF4BQ13523 1007 aaKnown RBP8.41□□□□□ -1.06
SYNE1-208ENST00000367256 TMEM132EQ6IEE7 984 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 FERMT3Q86UX7 667 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 RASAL2Q9UJF2 1139 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 KIF20AO95235 890 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 MNAT1P51948 309 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 CHMP4BP1P59074 171 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 ZWINTO95229 277 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 BMP2KLQ5H9B9 411 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 SLC12A7Q9Y666 1083 aa8.41□□□□□ -1.06
SYNE1-208ENST00000367256 A0A1W2PRG0 241 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 C11orf95C9JLR9 678 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-208ENST00000367256 TNPO1Q92973 898 aaKnown RBP8.4□□□□□ -1.06
SYNE1-208ENST00000367256 LIMCH1Q9UPQ0 1083 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 AQRO60306 1485 aaKnown RBP eCLIP8.4□□□□□ -1.06
SYNE1-208ENST00000367256 CKAP4Q07065 602 aaKnown RBP8.4□□□□□ -1.06
SYNE1-208ENST00000367256 SNW1Q13573 536 aaKnown RBP8.4□□□□□ -1.06
SYNE1-208ENST00000367256 KIF1BPQ96EK5 621 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 ZHX1Q9UKY1 873 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-208ENST00000367256 SYNJ1O43426 1573 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 SPDYE4A6NLX3 237 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 NSD2O96028 1365 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 GOLIM4O00461 696 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 ZNF692Q9BU19 519 aaPredicted RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms