RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 NKX1-1Q15270 411 aaPredicted RBP10.71□□□□□ -0.69
TRIM55-204ENST00000353317 CHPF2Q9P2E5 772 aa10.71□□□□□ -0.69
TRIM55-204ENST00000353317 SLIT2O94813 1529 aa10.71□□□□□ -0.7
TRIM55-204ENST00000353317 PCDH11XQ9BZA7 1347 aa10.71□□□□□ -0.7
TRIM55-204ENST00000353317 PCDH11YQ9BZA8 1340 aa10.71□□□□□ -0.7
TRIM55-204ENST00000353317 ARXQ96QS3 562 aa10.71□□□□□ -0.7
TRIM55-204ENST00000353317 ITGB4P16144 1822 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 FLIIQ13045 1269 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 CCDC30Q5VVM6 783 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 CHMP5Q9NZZ3 219 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 SPATA31A1Q5TZJ5 1347 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 PLEKHG2Q9H7P9 1386 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 XRCC6P12956 609 aaKnown RBP eCLIP10.7□□□□□ -0.7
TRIM55-204ENST00000353317 PIP4K2AP48426 406 aaPredicted RBP10.7□□□□□ -0.7
TRIM55-204ENST00000353317 GZF1Q9H116 711 aaPredicted RBP10.7□□□□□ -0.7
TRIM55-204ENST00000353317 RRAGDQ9NQL2 400 aaPredicted RBP10.7□□□□□ -0.7
TRIM55-204ENST00000353317 USP16Q9Y5T5 823 aa10.7□□□□□ -0.7
TRIM55-204ENST00000353317 BCL9LQ86UU0 1499 aa10.69□□□□□ -0.7
TRIM55-204ENST00000353317 FSD2A1L4K1 749 aa10.69□□□□□ -0.7
TRIM55-204ENST00000353317 PDIA6Q15084 440 aa10.69□□□□□ -0.7
TRIM55-204ENST00000353317 INTS3Q68E01 1043 aaKnown RBP10.69□□□□□ -0.7
TRIM55-204ENST00000353317 SIRT2Q8IXJ6 389 aa10.69□□□□□ -0.7
TRIM55-204ENST00000353317 C8orf37Q96NL8 207 aa10.69□□□□□ -0.7
TRIM55-204ENST00000353317 CABP4P57796 275 aa10.69□□□□□ -0.7
TRIM55-204ENST00000353317 API5Q9BZZ5 524 aaKnown RBP10.69□□□□□ -0.7
TRIM55-204ENST00000353317 GOLGA6L3A6NEY3 463 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 EIF5BO60841 1220 aaKnown RBP10.68□□□□□ -0.7
TRIM55-204ENST00000353317 NWD2Q9ULI1 1742 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 PTPRCP08575 1304 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 JCADQ9P266 1359 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 UBR2Q8IWV8 1755 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 NUCB1Q02818 461 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 SLC4A10Q6U841 1118 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 STK31Q9BXU1 1019 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 EP400Q96L91 3159 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 SPATA31A5Q5VU36 1347 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 SPATA31A7Q8IWB4 1347 aa10.68□□□□□ -0.7
TRIM55-204ENST00000353317 TRAK2O60296 914 aa10.67□□□□□ -0.7
TRIM55-204ENST00000353317 FKBP5Q13451 457 aaPredicted RBP10.67□□□□□ -0.7
TRIM55-204ENST00000353317 MEIS3Q99687 375 aa10.67□□□□□ -0.7
TRIM55-204ENST00000353317 PANK2Q9BZ23 570 aa10.67□□□□□ -0.7
TRIM55-204ENST00000353317 LNPKQ9C0E8 428 aa10.67□□□□□ -0.7
TRIM55-204ENST00000353317 HSP90AB1P08238 724 aaKnown RBP10.67□□□□□ -0.7
TRIM55-204ENST00000353317 HOXB7P09629 217 aa10.67□□□□□ -0.7
TRIM55-204ENST00000353317 RBM25P49756 843 aaKnown RBP10.67□□□□□ -0.7
TRIM55-204ENST00000353317 HSCBQ8IWL3 235 aa10.67□□□□□ -0.7
TRIM55-204ENST00000353317 PAPPAQ13219 1627 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 ERVV-2B6SEH9 535 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 LRP10Q7Z4F1 713 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 PIGBQ92521 554 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 NGLY1Q96IV0 654 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 ASAP1Q9ULH1 1129 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 SOS1Q07889 1333 aaPredicted RBP10.66□□□□□ -0.7
TRIM55-204ENST00000353317 KCPQ6ZWJ8 1503 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 DDIT3P35638 169 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 CHD1LQ86WJ1 897 aa10.66□□□□□ -0.7
TRIM55-204ENST00000353317 ADCY9O60503 1353 aa10.65□□□□□ -0.7
TRIM55-204ENST00000353317 PTCD1O75127 700 aaKnown RBP10.65□□□□□ -0.7
TRIM55-204ENST00000353317 UNC5CLQ8IV45 518 aa10.65□□□□□ -0.7
TRIM55-204ENST00000353317 MARCH10Q8NA82 808 aaPredicted RBP10.65□□□□□ -0.7
TRIM55-204ENST00000353317 PI4KAP2A4QPH2 592 aa10.65□□□□□ -0.71
TRIM55-204ENST00000353317 EXOC5O00471 708 aa10.65□□□□□ -0.71
TRIM55-204ENST00000353317 PI4KAP1Q8N8J0 262 aa10.65□□□□□ -0.71
TRIM55-204ENST00000353317 FNBP4Q8N3X1 1017 aaPredicted RBP10.64□□□□□ -0.71
TRIM55-204ENST00000353317 CCDC9Q9Y3X0 531 aaKnown RBP10.64□□□□□ -0.71
TRIM55-204ENST00000353317 N4BP2Q86UW6 1770 aaPredicted RBP10.64□□□□□ -0.71
TRIM55-204ENST00000353317 MYL6BP14649 208 aa10.64□□□□□ -0.71
TRIM55-204ENST00000353317 FAM98CQ17RN3 349 aaKnown RBP10.64□□□□□ -0.71
TRIM55-204ENST00000353317 SNX21Q969T3 373 aa10.64□□□□□ -0.71
TRIM55-204ENST00000353317 SLC4A9Q96Q91 983 aa10.64□□□□□ -0.71
TRIM55-204ENST00000353317 DBF4Q9UBU7 674 aaPredicted RBP10.64□□□□□ -0.71
TRIM55-204ENST00000353317 DOT1LQ8TEK3 1739 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 NBPF26B4DH59 902 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 NBPF14Q5TI25 921 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 NBPF10Q6P3W6 841 aaKnown RBP10.63□□□□□ -0.71
TRIM55-204ENST00000353317 TTC5Q8N0Z6 440 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 NBPF15Q8N660 670 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 ATG3Q9NT62 314 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 TNS2Q63HR2 1409 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 ATP10DQ9P241 1426 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 SNRPA1P09661 255 aaKnown RBP10.63□□□□□ -0.71
TRIM55-204ENST00000353317 AIMP1Q12904 312 aaKnown RBP10.63□□□□□ -0.71
TRIM55-204ENST00000353317 BMP2KLQ5H9B9 411 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 FMNL2Q96PY5 1086 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 KIF2CQ99661 725 aa10.63□□□□□ -0.71
TRIM55-204ENST00000353317 DDX11L8A8MPP1 907 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 PRIM1P49642 420 aaKnown RBP10.62□□□□□ -0.71
TRIM55-204ENST00000353317 USP44Q9H0E7 712 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 DDX21Q9NR30 783 aaKnown RBP eCLIP10.62□□□□□ -0.71
TRIM55-204ENST00000353317 A1BGP04217 495 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 DDB1Q16531 1140 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 BEND3Q5T5X7 828 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 ANKRD45Q5TZF3 282 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 PTF1AQ7RTS3 328 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 TNPO1Q92973 898 aaKnown RBP10.62□□□□□ -0.71
TRIM55-204ENST00000353317 ACSBG1Q96GR2 724 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 TMOD3Q9NYL9 352 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 THRAP3Q9Y2W1 955 aaKnown RBP10.62□□□□□ -0.71
TRIM55-204ENST00000353317 BCL9O00512 1426 aa10.62□□□□□ -0.71
TRIM55-204ENST00000353317 SPATA31A6Q5VVP1 1343 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms