RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ZC3H6P61129 1189 aaKnown RBP18.94■□□□□ 0.62
UPF3B-202ENST00000345865 ARXQ96QS3 562 aa18.94■□□□□ 0.62
UPF3B-202ENST00000345865 TRIM6-TRIM34B2RNG4 842 aa18.93■□□□□ 0.62
UPF3B-202ENST00000345865 DDX17Q92841 729 aaKnown RBP18.93■□□□□ 0.62
UPF3B-202ENST00000345865 GBP4Q96PP9 640 aa18.93■□□□□ 0.62
UPF3B-202ENST00000345865 C19orf44Q9H6X5 657 aa18.93■□□□□ 0.62
UPF3B-202ENST00000345865 SIPA1L3O60292 1781 aaPredicted RBP18.93■□□□□ 0.62
UPF3B-202ENST00000345865 ERBB3P21860 1342 aa18.92■□□□□ 0.62
UPF3B-202ENST00000345865 RHPN1Q8TCX5 695 aa18.92■□□□□ 0.62
UPF3B-202ENST00000345865 IL25Q9H293 177 aa18.92■□□□□ 0.62
UPF3B-202ENST00000345865 DBF4Q9UBU7 674 aaPredicted RBP18.92■□□□□ 0.62
UPF3B-202ENST00000345865 OVOS2A0A0G2JMS6 1433 aa18.92■□□□□ 0.62
UPF3B-202ENST00000345865 ALS2Q96Q42 1657 aa18.91■□□□□ 0.62
UPF3B-202ENST00000345865 XRCC6P12956 609 aaKnown RBP eCLIP18.91■□□□□ 0.62
UPF3B-202ENST00000345865 PKP1Q13835 747 aa18.91■□□□□ 0.62
UPF3B-202ENST00000345865 PALD1Q9ULE6 856 aa18.91■□□□□ 0.62
UPF3B-202ENST00000345865 KIF1AQ12756 1690 aa18.91■□□□□ 0.62
UPF3B-202ENST00000345865 ST18O60284 1047 aa18.9■□□□□ 0.62
UPF3B-202ENST00000345865 RAB11FIP3O75154 756 aa18.9■□□□□ 0.62
UPF3B-202ENST00000345865 L1TD1Q5T7N2 865 aaKnown RBP18.9■□□□□ 0.62
UPF3B-202ENST00000345865 ZGPATQ8N5A5 531 aaKnown RBP18.9■□□□□ 0.62
UPF3B-202ENST00000345865 MAP3K2Q9Y2U5 619 aa18.9■□□□□ 0.62
UPF3B-202ENST00000345865 GOLGA6L3A6NEY3 463 aa18.9■□□□□ 0.62
UPF3B-202ENST00000345865 CLEC17AQ6ZS10 378 aa18.9■□□□□ 0.62
UPF3B-202ENST00000345865 PI4K2BQ8TCG2 481 aa18.9■□□□□ 0.62
UPF3B-202ENST00000345865 ADAMTS7Q9UKP4 1686 aa18.89■□□□□ 0.61
UPF3B-202ENST00000345865 CHMP4AQ9BY43 222 aa18.89■□□□□ 0.61
UPF3B-202ENST00000345865 AOX1Q06278 1338 aa18.89■□□□□ 0.61
UPF3B-202ENST00000345865 MST1RQ04912 1400 aa18.89■□□□□ 0.61
UPF3B-202ENST00000345865 MAP4K4O95819 1239 aaPredicted RBP18.89■□□□□ 0.61
UPF3B-202ENST00000345865 CYP2E1P05181 493 aaPredicted RBP18.89■□□□□ 0.61
UPF3B-202ENST00000345865 ANO2Q9NQ90 1003 aa18.88■□□□□ 0.61
UPF3B-202ENST00000345865 BAG4O95429 457 aaKnown RBP18.88■□□□□ 0.61
UPF3B-202ENST00000345865 CWF19L2Q2TBE0 894 aaKnown RBP18.88■□□□□ 0.61
UPF3B-202ENST00000345865 KIF1BPQ96EK5 621 aa18.88■□□□□ 0.61
UPF3B-202ENST00000345865 KSR2Q6VAB6 950 aa18.87■□□□□ 0.61
UPF3B-202ENST00000345865 NEK4P51957 841 aa18.86■□□□□ 0.61
UPF3B-202ENST00000345865 PANK2Q9BZ23 570 aa18.86■□□□□ 0.61
UPF3B-202ENST00000345865 SLC39A6Q13433 755 aa18.86■□□□□ 0.61
UPF3B-202ENST00000345865 PDIA6Q15084 440 aa18.86■□□□□ 0.61
UPF3B-202ENST00000345865 STRCP1A6NGW2 1772 aa18.86■□□□□ 0.61
UPF3B-202ENST00000345865 MTX1Q13505 466 aa18.85■□□□□ 0.61
UPF3B-202ENST00000345865 KDM6AO15550 1401 aaPredicted RBP18.85■□□□□ 0.61
UPF3B-202ENST00000345865 CABLES1Q8TDN4 633 aa18.85■□□□□ 0.61
UPF3B-202ENST00000345865 TMEM94Q12767 1356 aa18.85■□□□□ 0.61
UPF3B-202ENST00000345865 LMTK3Q96Q04 1460 aa18.84■□□□□ 0.61
UPF3B-202ENST00000345865 ALDH1L1O75891 902 aa18.84■□□□□ 0.61
UPF3B-202ENST00000345865 NLRP2Q9NX02 1062 aa18.84■□□□□ 0.61
UPF3B-202ENST00000345865 ZDHHC9Q9Y397 364 aa18.84■□□□□ 0.61
UPF3B-202ENST00000345865 C9orf78Q9NZ63 289 aaPredicted RBP18.84■□□□□ 0.61
UPF3B-202ENST00000345865 COL18A1P39060 1754 aa18.83■□□□□ 0.61
UPF3B-202ENST00000345865 NUCB2P80303 420 aa18.83■□□□□ 0.61
UPF3B-202ENST00000345865 GAS2L3Q86XJ1 694 aa18.83■□□□□ 0.61
UPF3B-202ENST00000345865 KAZALD1Q96I82 304 aa18.83■□□□□ 0.61
UPF3B-202ENST00000345865 TMX3Q96JJ7 454 aa18.83■□□□□ 0.61
UPF3B-202ENST00000345865 CWC22Q9HCG8 908 aaKnown RBP18.83■□□□□ 0.61
UPF3B-202ENST00000345865 HYPKQ9NX55 129 aa18.83■□□□□ 0.61
UPF3B-202ENST00000345865 PA2G4Q9UQ80 394 aaKnown RBP18.83■□□□□ 0.61
UPF3B-202ENST00000345865 MEGF6O75095 1541 aa18.83■□□□□ 0.6
UPF3B-202ENST00000345865 SCN11AQ9UI33 1791 aa18.83■□□□□ 0.6
UPF3B-202ENST00000345865 NPHP3Q7Z494 1330 aa18.83■□□□□ 0.6
UPF3B-202ENST00000345865 CRYBG1Q9Y4K1 1723 aa18.83■□□□□ 0.6
UPF3B-202ENST00000345865 AIMP1Q12904 312 aaKnown RBP18.83■□□□□ 0.6
UPF3B-202ENST00000345865 ZNF790Q6PG37 636 aa18.83■□□□□ 0.6
UPF3B-202ENST00000345865 RAPGEF4Q8WZA2 1011 aa18.83■□□□□ 0.6
UPF3B-202ENST00000345865 DDX21Q9NR30 783 aaKnown RBP eCLIP18.83■□□□□ 0.6
UPF3B-202ENST00000345865 C5P01031 1676 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 ATF3P18847 181 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 SKOR2Q2VWA4 1001 aaPredicted RBP18.82■□□□□ 0.6
UPF3B-202ENST00000345865 IL17RAQ96F46 866 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 PHKG2P15735 406 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 ANAPC15P60006 121 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 NFATC2IPQ8NCF5 419 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 SLC52A2Q9HAB3 445 aa18.82■□□□□ 0.6
UPF3B-202ENST00000345865 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.81■□□□□ 0.6
UPF3B-202ENST00000345865 MCCP23508 829 aa18.8■□□□□ 0.6
UPF3B-202ENST00000345865 USP42Q9H9J4 1324 aaKnown RBP18.8■□□□□ 0.6
UPF3B-202ENST00000345865 CHRNA2Q15822 529 aa18.8■□□□□ 0.6
UPF3B-202ENST00000345865 HSP90AB4PQ58FF6 505 aa18.8■□□□□ 0.6
UPF3B-202ENST00000345865 LINS1Q8NG48 757 aa18.8■□□□□ 0.6
UPF3B-202ENST00000345865 SUCLG2Q96I99 432 aa18.8■□□□□ 0.6
UPF3B-202ENST00000345865 UPF3BQ9BZI7 483 aaKnown RBP18.8■□□□□ 0.6
UPF3B-202ENST00000345865 SGSM2O43147 1006 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 IGKV5-2P06315 115 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 PTMSP20962 102 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 OS9Q13438 667 aaPredicted RBP18.79■□□□□ 0.6
UPF3B-202ENST00000345865 MCTP1Q6DN14 999 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 CHAMP1Q96JM3 812 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 GRPEL1Q9HAV7 217 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 GRM8O00222 908 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 TATP17735 454 aaPredicted RBP18.79■□□□□ 0.6
UPF3B-202ENST00000345865 HSPA4P34932 840 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 MRE11P49959 708 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 UTYO14607 1347 aa18.79■□□□□ 0.6
UPF3B-202ENST00000345865 NOL8Q76FK4 1167 aaKnown RBP18.78■□□□□ 0.6
UPF3B-202ENST00000345865 GOLGA6L22H0YM25 854 aa18.78■□□□□ 0.6
UPF3B-202ENST00000345865 MYL6BP14649 208 aa18.78■□□□□ 0.6
UPF3B-202ENST00000345865 CUL4AQ13619 759 aa18.78■□□□□ 0.6
UPF3B-202ENST00000345865 ZNF496Q96IT1 587 aaPredicted RBP18.78■□□□□ 0.6
UPF3B-202ENST00000345865 BICC1Q9H694 974 aaKnown RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms