RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 C4BP0C0L5 1744 aa19.9■□□□□ 0.78
SEC13-201ENST00000337354 CRKLP46109 303 aaKnown RBP19.9■□□□□ 0.78
SEC13-201ENST00000337354 ZNF827Q17R98 1081 aa19.9■□□□□ 0.78
SEC13-201ENST00000337354 TFCP2L1Q9NZI6 479 aa19.9■□□□□ 0.78
SEC13-201ENST00000337354 FANCIQ9NVI1 1328 aa19.9■□□□□ 0.78
SEC13-201ENST00000337354 DUSP27Q5VZP5 1158 aa19.89■□□□□ 0.77
SEC13-201ENST00000337354 INTS5Q6P9B9 1019 aaKnown RBP19.89■□□□□ 0.77
SEC13-201ENST00000337354 TRMT2AQ8IZ69 625 aaKnown RBP19.89■□□□□ 0.77
SEC13-201ENST00000337354 FLAD1Q8NFF5 587 aa19.89■□□□□ 0.77
SEC13-201ENST00000337354 CCDC87Q9NVE4 849 aa19.89■□□□□ 0.77
SEC13-201ENST00000337354 ZNF831Q5JPB2 1677 aa19.88■□□□□ 0.77
SEC13-201ENST00000337354 PRAMEF22A3QJZ6 481 aa19.88■□□□□ 0.77
SEC13-201ENST00000337354 RPS6KA4O75676 772 aa19.88■□□□□ 0.77
SEC13-201ENST00000337354 RTCBQ9Y3I0 505 aaKnown RBP19.88■□□□□ 0.77
SEC13-201ENST00000337354 KRT24Q2M2I5 525 aa19.87■□□□□ 0.77
SEC13-201ENST00000337354 C8orf58Q8NAV2 365 aa19.87■□□□□ 0.77
SEC13-201ENST00000337354 CDCA7LQ96GN5 454 aa19.87■□□□□ 0.77
SEC13-201ENST00000337354 GNPATO15228 680 aa19.86■□□□□ 0.77
SEC13-201ENST00000337354 SSFA2P28290 1259 aa19.86■□□□□ 0.77
SEC13-201ENST00000337354 ERBB4Q15303 1308 aa19.86■□□□□ 0.77
SEC13-201ENST00000337354 UBR2Q8IWV8 1755 aa19.86■□□□□ 0.77
SEC13-201ENST00000337354 COL5A3P25940 1745 aaPredicted RBP19.86■□□□□ 0.77
SEC13-201ENST00000337354 ELL2O00472 640 aaPredicted RBP19.85■□□□□ 0.77
SEC13-201ENST00000337354 A1BGP04217 495 aa19.85■□□□□ 0.77
SEC13-201ENST00000337354 ADRA2BP18089 450 aa19.85■□□□□ 0.77
SEC13-201ENST00000337354 UBR3Q6ZT12 1888 aa19.85■□□□□ 0.77
SEC13-201ENST00000337354 KDM3BQ7LBC6 1761 aa19.85■□□□□ 0.77
SEC13-201ENST00000337354 EIF2S2P20042 333 aaKnown RBP19.84■□□□□ 0.77
SEC13-201ENST00000337354 IL6STP40189 918 aaPredicted RBP19.84■□□□□ 0.77
SEC13-201ENST00000337354 EXOSC9Q06265 439 aaKnown RBP19.84■□□□□ 0.77
SEC13-201ENST00000337354 TWISTNBQ3B726 338 aaPredicted RBP19.84■□□□□ 0.77
SEC13-201ENST00000337354 TRAPPC3LQ5T215 181 aa19.84■□□□□ 0.77
SEC13-201ENST00000337354 ZBTB1Q9Y2K1 713 aa19.84■□□□□ 0.77
SEC13-201ENST00000337354 TJP1Q07157 1748 aa19.83■□□□□ 0.77
SEC13-201ENST00000337354 CANXP27824 592 aaKnown RBP19.83■□□□□ 0.77
SEC13-201ENST00000337354 HDGFL1Q5TGJ6 251 aa19.83■□□□□ 0.77
SEC13-201ENST00000337354 NPM2Q86SE8 214 aaKnown RBP19.83■□□□□ 0.77
SEC13-201ENST00000337354 TSPYL6Q8N831 410 aa19.83■□□□□ 0.77
SEC13-201ENST00000337354 PDGFDQ9GZP0 370 aaPredicted RBP19.83■□□□□ 0.77
SEC13-201ENST00000337354 CICQ96RK0 1608 aaPredicted RBP19.83■□□□□ 0.77
SEC13-201ENST00000337354 EIF5P55010 431 aaKnown RBP19.83■□□□□ 0.76
SEC13-201ENST00000337354 CCDC30Q5VVM6 783 aa19.83■□□□□ 0.76
SEC13-201ENST00000337354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.82■□□□□ 0.76
SEC13-201ENST00000337354 VAMP4O75379 141 aa19.82■□□□□ 0.76
SEC13-201ENST00000337354 ZBTB7AO95365 584 aa19.82■□□□□ 0.76
SEC13-201ENST00000337354 SPON1Q9HCB6 807 aa19.82■□□□□ 0.76
SEC13-201ENST00000337354 DBF4Q9UBU7 674 aaPredicted RBP19.82■□□□□ 0.76
SEC13-201ENST00000337354 PNPLA7Q6ZV29 1317 aa19.81■□□□□ 0.76
SEC13-201ENST00000337354 A0A087WZG4 1122 aa19.81■□□□□ 0.76
SEC13-201ENST00000337354 NBPF26B4DH59 902 aa19.81■□□□□ 0.76
SEC13-201ENST00000337354 CT47B1P0C2W7 299 aaPredicted RBP19.81■□□□□ 0.76
SEC13-201ENST00000337354 NBPF10Q6P3W6 841 aaKnown RBP19.81■□□□□ 0.76
SEC13-201ENST00000337354 NBPF15Q8N660 670 aa19.81■□□□□ 0.76
SEC13-201ENST00000337354 ZNF428Q96B54 188 aa19.81■□□□□ 0.76
SEC13-201ENST00000337354 DDX21Q9NR30 783 aaKnown RBP eCLIP19.81■□□□□ 0.763e-7■■■□□ 17.1
SEC13-201ENST00000337354 SLC16A10Q8TF71 515 aa19.8■□□□□ 0.76
SEC13-201ENST00000337354 ARHGEF1Q92888 912 aaKnown RBP19.8■□□□□ 0.76
SEC13-201ENST00000337354 MSH5O43196 834 aa19.79■□□□□ 0.76
SEC13-201ENST00000337354 PHF14O94880 888 aa19.79■□□□□ 0.76
SEC13-201ENST00000337354 RFC4P35249 363 aa19.79■□□□□ 0.76
SEC13-201ENST00000337354 PDIA6Q15084 440 aa19.79■□□□□ 0.76
SEC13-201ENST00000337354 COL23A1Q86Y22 540 aaPredicted RBP19.79■□□□□ 0.76
SEC13-201ENST00000337354 PPP1R1BQ9UD71 204 aaPredicted RBP19.79■□□□□ 0.76
SEC13-201ENST00000337354 AMIGO3Q86WK7 504 aa19.78■□□□□ 0.76
SEC13-201ENST00000337354 NECTIN2Q92692 538 aa19.78■□□□□ 0.76
SEC13-201ENST00000337354 HYPKQ9NX55 129 aa19.78■□□□□ 0.76
SEC13-201ENST00000337354 STK31Q9BXU1 1019 aa19.77■□□□□ 0.76
SEC13-201ENST00000337354 ATF5Q9Y2D1 282 aaPredicted RBP19.77■□□□□ 0.76
SEC13-201ENST00000337354 MYL6BP14649 208 aa19.76■□□□□ 0.75
SEC13-201ENST00000337354 PIP4K2AP48426 406 aaPredicted RBP19.76■□□□□ 0.75
SEC13-201ENST00000337354 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
SEC13-201ENST00000337354 MTFR1LQ9H019 292 aa19.76■□□□□ 0.75
SEC13-201ENST00000337354 CHPF2Q9P2E5 772 aa19.76■□□□□ 0.75
SEC13-201ENST00000337354 ZNF330Q9Y3S2 320 aaPredicted RBP19.76■□□□□ 0.75
SEC13-201ENST00000337354 ZPR1O75312 459 aa19.75■□□□□ 0.75
SEC13-201ENST00000337354 LRP10Q7Z4F1 713 aa19.75■□□□□ 0.75
SEC13-201ENST00000337354 NARFQ9UHQ1 456 aa19.75■□□□□ 0.75
SEC13-201ENST00000337354 COL15A1P39059 1388 aa19.75■□□□□ 0.75
SEC13-201ENST00000337354 C4AP0C0L4 1744 aa19.75■□□□□ 0.75
SEC13-201ENST00000337354 COL24A1Q17RW2 1714 aa19.75■□□□□ 0.75
SEC13-201ENST00000337354 MYH14Q7Z406 1995 aaKnown RBP19.74■□□□□ 0.75
SEC13-201ENST00000337354 RGL2O15211 777 aa19.74■□□□□ 0.75
SEC13-201ENST00000337354 SMIM5Q71RC9 77 aa19.74■□□□□ 0.75
SEC13-201ENST00000337354 DZIP3Q86Y13 1208 aaKnown RBP19.73■□□□□ 0.75
SEC13-201ENST00000337354 ARXQ96QS3 562 aa19.73■□□□□ 0.75
SEC13-201ENST00000337354 SRCAPQ6ZRS2 3230 aa19.73■□□□□ 0.75
SEC13-201ENST00000337354 SLC4A2P04920 1241 aa19.72■□□□□ 0.75
SEC13-201ENST00000337354 PROSER3Q2NL68 480 aa19.72■□□□□ 0.75
SEC13-201ENST00000337354 NLGN1Q8N2Q7 840 aa19.72■□□□□ 0.75
SEC13-201ENST00000337354 TBC1D2BQ9UPU7 963 aa19.72■□□□□ 0.75
SEC13-201ENST00000337354 USP42Q9H9J4 1324 aaKnown RBP19.72■□□□□ 0.75
SEC13-201ENST00000337354 ERVV-1B6SEH8 477 aa19.71■□□□□ 0.75
SEC13-201ENST00000337354 ALDH1L2Q3SY69 923 aa19.71■□□□□ 0.75
SEC13-201ENST00000337354 COPS6Q7L5N1 327 aa19.71■□□□□ 0.75
SEC13-201ENST00000337354 ANXA1P04083 346 aa19.7■□□□□ 0.74
SEC13-201ENST00000337354 CLEC4GQ6UXB4 293 aa19.7■□□□□ 0.74
SEC13-201ENST00000337354 KIF6Q6ZMV9 814 aa19.7■□□□□ 0.74
SEC13-201ENST00000337354 GYS1P13807 737 aa19.7■□□□□ 0.74
SEC13-201ENST00000337354 USPL1Q5W0Q7 1092 aa19.7■□□□□ 0.74
SEC13-201ENST00000337354 XAGE3Q8WTP9 111 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms