RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CIB2O75838 187 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CLCN1P35523 988 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 STMN2Q93045 179 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 SAMD15Q9P1V8 674 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 RABGAP1Q9Y3P9 1069 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 RIC3Q7Z5B4 369 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 AKNAQ7Z591 1439 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CTNNA2P26232 953 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 PIP4K2BP78356 416 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CETN1Q12798 172 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CADPSQ9ULU8 1353 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CAMK4Q16566 473 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 MRVI1Q9Y6F6 885 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 MAP4K4O95819 1239 aaPredicted RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 GOLGA1Q92805 767 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC77Q9BR77 488 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 PYM1Q9BRP8 204 aaKnown RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 ZNF853P0CG23 659 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 STMN1P16949 149 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CLNS1AP54105 237 aaKnown RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC129Q6ZRS4 1044 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC114Q96M63 670 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CASQ2O14958 399 aaPredicted RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 MATR3P43243 847 aaKnown RBP eCLIP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 PPFIBP2Q8ND30 876 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 MACROD2A1Z1Q3 448 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 SURF6O75683 361 aaKnown RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 ADCY5O95622 1261 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 FMNL3Q8IVF7 1028 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CASTP20810 708 aaKnown RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 PRPHP41219 470 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 NBPF11Q86T75 865 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CTAGE9A4FU28 777 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 HS1BP3Q53T59 392 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC30Q5VVM6 783 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 JADE2Q9NQC1 790 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 ACTN2P35609 894 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 ZBTB16Q05516 673 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 SETDB1Q15047 1291 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 WHAMMP3Q1A5X7 153 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 ATRIPQ8WXE1 791 aa7.11□□□□□ -1.27
CSMD1-201ENST00000335551 DDX19AQ9NUU7 478 aaKnown RBP7.11□□□□□ -1.27
CSMD1-201ENST00000335551 ZNF365Q70YC5 407 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 UBAC1Q9BSL1 405 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 PABPN1LA6NDY0 278 aaKnown RBP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 STK3Q13188 491 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 RAB34Q9BZG1 259 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 OGFRQ9NZT2 677 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 ALDH3A1P30838 453 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 COMMD10Q9Y6G5 202 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC12Q8WUD4 166 aaPredicted RBP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 FAM114A2Q9NRY5 505 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 SSBP05455 408 aaKnown RBP eCLIP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 ARID4AP29374 1257 aaPredicted RBP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 ATP2C2O75185 946 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 TTC39AQ5SRH9 613 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 TMC6Q7Z403 805 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 TTC12Q9H892 705 aaPredicted RBP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC172P0C7W6 258 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 MCM6Q14566 821 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 MAP7D1Q3KQU3 841 aa7.1□□□□□ -1.27
CSMD1-201ENST00000335551 DZIP1Q86YF9 867 aaKnown RBP7.1□□□□□ -1.27
CSMD1-201ENST00000335551 GNG11P61952 73 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 TNIP1Q15025 636 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 CEP128Q6ZU80 1094 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 TPD52P55327 224 aaPredicted RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 ARFGAP2Q8N6H7 521 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 FAM76AQ8TAV0 307 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 TRMT1Q9NXH9 659 aaKnown RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 TDRD9Q8NDG6 1382 aaKnown RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 CTAGE15A4D2H0 777 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 MSH5O43196 834 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 BUB1BO60566 1050 aaPredicted RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 CTAGE8P0CG41 777 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 CTAGE6Q86UF2 777 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 CTAGE4Q8IX94 777 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 NECTIN2Q92692 538 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 LRRC45Q96CN5 670 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 SELENOOQ9BVL4 669 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 U3KPZ7 1027 aaPredicted RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 EVA1CP58658 441 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 KIF5AQ12840 1032 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 CFAP58Q5T655 872 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 HDXQ7Z353 690 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 SEC63Q9UGP8 760 aaKnown RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 KIAA0753Q2KHM9 967 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 GBP7Q8N8V2 638 aaPredicted RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 JAKMIP2Q96AA8 810 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 JAKMIP1Q96N16 626 aaKnown RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 VCXQ9H320 206 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 DHX29Q7Z478 1369 aaKnown RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 PCK1P35558 622 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 SERPINA10Q9UK55 444 aa7.09□□□□□ -1.27
CSMD1-201ENST00000335551 VGFO15240 615 aaPredicted RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 SUPT6HQ7KZ85 1726 aaKnown RBP7.09□□□□□ -1.27
CSMD1-201ENST00000335551 ATP2A1O14983 1001 aa7.09□□□□□ -1.28
CSMD1-201ENST00000335551 SAMD1Q6SPF0 538 aaPredicted RBP7.09□□□□□ -1.28
CSMD1-201ENST00000335551 CHD1LQ86WJ1 897 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms