RNA–Protein interactions for RNA: ENST00000322507.12

COL12A1-201, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL12A1, Length 11,723 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-201ENST00000322507 ME1P48163 572 aa11.22□□□□□ -0.61
COL12A1-201ENST00000322507 TWISTNBQ3B726 338 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 MIER3Q7Z3K6 550 aa11.22□□□□□ -0.61
COL12A1-201ENST00000322507 DDX27Q96GQ7 796 aaKnown RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 CCDC94Q9BW85 323 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 IKQ13123 557 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 SH2B1Q9NRF2 756 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 LRRC23Q53EV4 343 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 RMDN2Q96LZ7 410 aa11.22□□□□□ -0.61
COL12A1-201ENST00000322507 SCAND2PQ9GZW5 306 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 U3KPZ7 1027 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 CLNS1AP54105 237 aaKnown RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 CNPY4Q8N129 248 aa11.22□□□□□ -0.61
COL12A1-201ENST00000322507 SYTL4Q96C24 671 aaPredicted RBP11.22□□□□□ -0.61
COL12A1-201ENST00000322507 RFC1P35251 1148 aaPredicted RBP11.21□□□□□ -0.61
COL12A1-201ENST00000322507 MVPQ14764 893 aaKnown RBP11.21□□□□□ -0.61
COL12A1-201ENST00000322507 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.21□□□□□ -0.61
COL12A1-201ENST00000322507 TRIM63Q969Q1 353 aa11.21□□□□□ -0.61
COL12A1-201ENST00000322507 POTEDQ86YR6 584 aa11.21□□□□□ -0.61
COL12A1-201ENST00000322507 RPUSD2Q8IZ73 545 aaKnown RBP11.21□□□□□ -0.61
COL12A1-201ENST00000322507 NKTRP30414 1462 aaKnown RBP11.21□□□□□ -0.61
COL12A1-201ENST00000322507 TTC39AQ5SRH9 613 aa11.21□□□□□ -0.61
COL12A1-201ENST00000322507 ATF7IPQ6VMQ6 1270 aa11.21□□□□□ -0.61
COL12A1-201ENST00000322507 TROQ12816 1431 aaPredicted RBP11.21□□□□□ -0.61
COL12A1-201ENST00000322507 SPG7Q9UQ90 795 aa11.21□□□□□ -0.61
COL12A1-201ENST00000322507 RPAINQ86UA6 219 aa11.21□□□□□ -0.62
COL12A1-201ENST00000322507 TCP11L2Q8N4U5 519 aa11.21□□□□□ -0.62
COL12A1-201ENST00000322507 NSD2O96028 1365 aa11.21□□□□□ -0.62
COL12A1-201ENST00000322507 CTTNBP2Q8WZ74 1663 aa11.21□□□□□ -0.62
COL12A1-201ENST00000322507 HDAC1Q13547 482 aaPredicted RBP11.21□□□□□ -0.62
COL12A1-201ENST00000322507 NUTM2DQ5VT03 806 aaPredicted RBP11.21□□□□□ -0.62
COL12A1-201ENST00000322507 TSNAXIP1Q2TAA8 658 aa11.21□□□□□ -0.62
COL12A1-201ENST00000322507 CCDC152Q4G0S7 254 aa11.21□□□□□ -0.62
COL12A1-201ENST00000322507 NEBLO76041 1014 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 CASQ2O14958 399 aaPredicted RBP11.2□□□□□ -0.62
COL12A1-201ENST00000322507 BLOC1S2Q6QNY1 142 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 THOC2Q8NI27 1593 aaKnown RBP11.2□□□□□ -0.62
COL12A1-201ENST00000322507 MRC2Q9UBG0 1479 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 CFAP58Q5T655 872 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 GRPEL1Q9HAV7 217 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
COL12A1-201ENST00000322507 NLRP5P59047 1200 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 TNIP1Q15025 636 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 WHAMMQ8TF30 809 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 ANAPC4Q9UJX5 808 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 ATP6V1AP38606 617 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 MTHFSP49914 203 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 RPAP2Q8IXW5 612 aaPredicted RBP11.2□□□□□ -0.62
COL12A1-201ENST00000322507 MSH5O43196 834 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 KIF5CO60282 957 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 TMEM132AQ24JP5 1023 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 ABTB2Q8N961 1025 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 VCX3BQ9H321 246 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 STIM2Q9P246 746 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 PPP2R1AP30153 589 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 NLRP6P59044 892 aa11.2□□□□□ -0.62
COL12A1-201ENST00000322507 SPATA32Q96LK8 384 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 CCDC114Q96M63 670 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 EPB41L2O43491 1005 aaKnown RBP11.19□□□□□ -0.62
COL12A1-201ENST00000322507 LUC7L3O95232 432 aaKnown RBP11.19□□□□□ -0.62
COL12A1-201ENST00000322507 FIBPO43427 364 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 HDGFL1Q5TGJ6 251 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 FCHSD2O94868 740 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 LARP1BQ659C4 914 aaKnown RBP11.19□□□□□ -0.62
COL12A1-201ENST00000322507 CACNA2D3Q8IZS8 1091 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 AKAP2Q9Y2D5 859 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 CFTRP13569 1480 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 SNAPC4Q5SXM2 1469 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 NUTM2FA1L443 756 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 GBP1P32455 592 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 A6NNZ2 444 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 TUBB8Q3ZCM7 444 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 BICD1Q96G01 975 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 NLRP2Q9NX02 1062 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
COL12A1-201ENST00000322507 CTAGE6Q86UF2 777 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 CEP57Q86XR8 500 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 THEMISQ8N1K5 641 aaPredicted RBP11.19□□□□□ -0.62
COL12A1-201ENST00000322507 PANK1Q8TE04 598 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 NUP62CLQ9H1M0 184 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 FBXW7Q969H0 707 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 UBAC1Q9BSL1 405 aa11.19□□□□□ -0.62
COL12A1-201ENST00000322507 ALDH1L2Q3SY69 923 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 B4GALNT4Q76KP1 1039 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 UPF3BQ9BZI7 483 aaKnown RBP11.18□□□□□ -0.62
COL12A1-201ENST00000322507 CNNM1Q9NRU3 951 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 CCDC121Q6ZUS5 278 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 LMAN1P49257 510 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 TAF7Q15545 349 aaPredicted RBP11.18□□□□□ -0.62
COL12A1-201ENST00000322507 MAP3K11Q16584 847 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 TAOK3Q9H2K8 898 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 DNAJC8O75937 253 aaPredicted RBP11.18□□□□□ -0.62
COL12A1-201ENST00000322507 GSDMDP57764 484 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 ARHGAP29Q52LW3 1261 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 STMN4Q9H169 189 aaPredicted RBP11.18□□□□□ -0.62
COL12A1-201ENST00000322507 TUBB4AP04350 444 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 SFPQP23246 707 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL12A1-201ENST00000322507 TAF4BQ92750 862 aa11.18□□□□□ -0.62
COL12A1-201ENST00000322507 PAXBP1Q9Y5B6 917 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms