RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 WDHD1O75717 1129 aaPredicted RBP8.82□□□□□ -1
LIMCH1-201ENST00000313860 BAG4O95429 457 aaKnown RBP8.82□□□□□ -1
LIMCH1-201ENST00000313860 IMMTQ16891 758 aaKnown RBP8.82□□□□□ -1
LIMCH1-201ENST00000313860 MTUS1Q9ULD2 1270 aa8.82□□□□□ -1
LIMCH1-201ENST00000313860 CEP85LQ5SZL2 805 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 TACO1Q9BSH4 297 aaKnown RBP8.81□□□□□ -1
LIMCH1-201ENST00000313860 CCDC159P0C7I6 412 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 DDX42Q86XP3 938 aaKnown RBP eCLIP8.81□□□□□ -1
LIMCH1-201ENST00000313860 C7orf25Q9BPX7 421 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 ZSCAN32Q9NX65 697 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 TACC3Q9Y6A5 838 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 RHOBTB1O94844 696 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 MVPQ14764 893 aaKnown RBP8.81□□□□□ -1
LIMCH1-201ENST00000313860 NUTM1Q86Y26 1132 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 HLTFQ14527 1009 aaKnown RBP eCLIP8.81□□□□□ -1
LIMCH1-201ENST00000313860 DHX8Q14562 1220 aaKnown RBP8.81□□□□□ -1
LIMCH1-201ENST00000313860 CCDC121Q6ZUS5 278 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 FILIP1Q7Z7B0 1213 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 SPATS2Q86XZ4 545 aaKnown RBP8.81□□□□□ -1
LIMCH1-201ENST00000313860 TRIM8Q9BZR9 551 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 SAFBQ15424 915 aaKnown RBP eCLIP8.81□□□□□ -1
LIMCH1-201ENST00000313860 FSCBQ5H9T9 825 aa8.81□□□□□ -1
LIMCH1-201ENST00000313860 RPGRQ92834 1020 aaKnown RBP8.81□□□□□ -1
LIMCH1-201ENST00000313860 NFKBIL1Q9UBC1 381 aaPredicted RBP8.81□□□□□ -1
LIMCH1-201ENST00000313860 KRT10P13645 584 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 ZC3H6P61129 1189 aaKnown RBP8.8□□□□□ -1
LIMCH1-201ENST00000313860 OTUD6BQ8N6M0 293 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 ASZ1Q8WWH4 475 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 DPF3Q92784 378 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 CDR2Q01850 454 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 TAOK3Q9H2K8 898 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 GTF2E1P29083 439 aaPredicted RBP8.8□□□□□ -1
LIMCH1-201ENST00000313860 TMEM57Q8N5G2 664 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 DAAM1Q9Y4D1 1078 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 ERICH2A1L162 156 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 CTNNA2P26232 953 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 AFAP1L1Q8TED9 768 aa8.8□□□□□ -1
LIMCH1-201ENST00000313860 OPHN1O60890 802 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 CIB2O75838 187 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 NMIQ13287 307 aaPredicted RBP8.79□□□□□ -1
LIMCH1-201ENST00000313860 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.79□□□□□ -1
LIMCH1-201ENST00000313860 NFE2L2Q16236 605 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 ATRIPQ8WXE1 791 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 PAWRQ96IZ0 340 aaKnown RBP8.79□□□□□ -1
LIMCH1-201ENST00000313860 CCDC114Q96M63 670 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 LMNAP02545 664 aaKnown RBP8.79□□□□□ -1
LIMCH1-201ENST00000313860 NOP2P46087 812 aaKnown RBP8.79□□□□□ -1
LIMCH1-201ENST00000313860 SMARCC2Q8TAQ2 1214 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 IPO8O15397 1037 aaKnown RBP8.79□□□□□ -1
LIMCH1-201ENST00000313860 DZIP1LQ8IYY4 767 aaKnown RBP8.79□□□□□ -1
LIMCH1-201ENST00000313860 CACNA2D3Q8IZS8 1091 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 GBP5Q96PP8 586 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 TRIM4Q9C037 500 aa8.79□□□□□ -1
LIMCH1-201ENST00000313860 MSH5O43196 834 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 ARMC9Q7Z3E5 817 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 CFAP100Q494V2 611 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 SCHIP1Q9P0W5 487 aaPredicted RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 CENPJQ9HC77 1338 aaPredicted RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 ZFXP17010 805 aaPredicted RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 XPCQ01831 940 aaPredicted RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 KRT74Q7RTS7 529 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 CHMP4CQ96CF2 233 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 SPATA17Q96L03 361 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 NSRP1Q9H0G5 558 aaKnown RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 PDE3BQ13370 1112 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 SLC4A8Q2Y0W8 1093 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 RUFY2Q8WXA3 655 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 STAC3Q96MF2 364 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 CACYBPQ9HB71 228 aaKnown RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 RSF1Q96T23 1441 aaPredicted RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 WDR46O15213 610 aaKnown RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 ZC3H18Q86VM9 953 aaKnown RBP8.78□□□□□ -1
LIMCH1-201ENST00000313860 CCDC68Q9H2F9 335 aa8.78□□□□□ -1
LIMCH1-201ENST00000313860 FANCIQ9NVI1 1328 aa8.77□□□□□ -1
LIMCH1-201ENST00000313860 CETN2P41208 172 aa8.77□□□□□ -1
LIMCH1-201ENST00000313860 ARIH1Q9Y4X5 557 aaPredicted RBP8.77□□□□□ -1
LIMCH1-201ENST00000313860 SMTNL1A8MU46 457 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 TRIM21P19474 475 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 KIF22Q14807 665 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 AHI1Q8N157 1196 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 SELENOSQ9BQE4 189 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 BRMS1Q9HCU9 246 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 GOLGA6BA6NDN3 693 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 RPGRIP1Q96KN7 1286 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 ATP11AP98196 1134 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 TNIP1Q15025 636 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 ARHGAP29Q52LW3 1261 aa8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 SEC62Q99442 399 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-201ENST00000313860 RABEP2Q9H5N1 569 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 PHEXP78562 749 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 NEDD9Q14511 834 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 CDC40O60508 579 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 PCYT1AP49585 367 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 AIMP1Q12904 312 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 RGL3Q3MIN7 710 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 RB1CC1Q8TDY2 1594 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 URI1O94763 535 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 CUL3Q13618 768 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 ZNF354CQ86Y25 554 aa8.76□□□□□ -1.01
LIMCH1-201ENST00000313860 ANKS4BQ8N8V4 417 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms