RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 ZNF827Q17R98 1081 aa31.7■■■□□ 2.67
HOXC9-201ENST00000303450 CNTNAP4Q9C0A0 1308 aa31.7■■■□□ 2.66
HOXC9-201ENST00000303450 SLC15A2Q16348 729 aa31.7■■■□□ 2.66
HOXC9-201ENST00000303450 RC3H1Q5TC82 1133 aaKnown RBP31.7■■■□□ 2.66
HOXC9-201ENST00000303450 DUSP27Q5VZP5 1158 aa31.69■■■□□ 2.66
HOXC9-201ENST00000303450 CCDC87Q9NVE4 849 aa31.68■■■□□ 2.66
HOXC9-201ENST00000303450 TFCP2L1Q9NZI6 479 aa31.68■■■□□ 2.66
HOXC9-201ENST00000303450 ELL2O00472 640 aaPredicted RBP31.67■■■□□ 2.66
HOXC9-201ENST00000303450 C8orf58Q8NAV2 365 aa31.67■■■□□ 2.66
HOXC9-201ENST00000303450 YTHDC1Q96MU7 727 aaKnown RBP31.67■■■□□ 2.66
HOXC9-201ENST00000303450 MYH14Q7Z406 1995 aaKnown RBP31.67■■■□□ 2.66
HOXC9-201ENST00000303450 GNPATO15228 680 aa31.66■■■□□ 2.66
HOXC9-201ENST00000303450 HOXB7P09629 217 aa31.66■■■□□ 2.66
HOXC9-201ENST00000303450 LAMB4A4D0S4 1761 aa31.66■■■□□ 2.66
HOXC9-201ENST00000303450 EIF2S2P20042 333 aaKnown RBP31.65■■■□□ 2.66
HOXC9-201ENST00000303450 INTS5Q6P9B9 1019 aaKnown RBP31.65■■■□□ 2.66
HOXC9-201ENST00000303450 EXOSC9Q06265 439 aaKnown RBP31.65■■■□□ 2.66
HOXC9-201ENST00000303450 A1BGP04217 495 aa31.64■■■□□ 2.66
HOXC9-201ENST00000303450 TSPYL6Q8N831 410 aa31.63■■■□□ 2.65
HOXC9-201ENST00000303450 ZBTB1Q9Y2K1 713 aa31.63■■■□□ 2.65
HOXC9-201ENST00000303450 RTCBQ9Y3I0 505 aaKnown RBP31.63■■■□□ 2.65
HOXC9-201ENST00000303450 CANXP27824 592 aaKnown RBP31.62■■■□□ 2.65
HOXC9-201ENST00000303450 TWISTNBQ3B726 338 aaPredicted RBP31.62■■■□□ 2.65
HOXC9-201ENST00000303450 TRMT2AQ8IZ69 625 aaKnown RBP31.62■■■□□ 2.65
HOXC9-201ENST00000303450 SOS1Q07889 1333 aaPredicted RBP31.62■■■□□ 2.65
HOXC9-201ENST00000303450 RPS6KA4O75676 772 aa31.61■■■□□ 2.65
HOXC9-201ENST00000303450 R3HDM1Q15032 1099 aaKnown RBP31.61■■■□□ 2.65
HOXC9-201ENST00000303450 HDGFL1Q5TGJ6 251 aa31.6■■■□□ 2.65
HOXC9-201ENST00000303450 NECTIN2Q92692 538 aa31.6■■■□□ 2.65
HOXC9-201ENST00000303450 UBR3Q6ZT12 1888 aa31.6■■■□□ 2.65
HOXC9-201ENST00000303450 PHF14O94880 888 aa31.59■■■□□ 2.65
HOXC9-201ENST00000303450 SSFA2P28290 1259 aa31.58■■■□□ 2.65
HOXC9-201ENST00000303450 PIP4K2AP48426 406 aaPredicted RBP31.58■■■□□ 2.65
HOXC9-201ENST00000303450 CHMP4AQ9BY43 222 aa31.58■■■□□ 2.65
HOXC9-201ENST00000303450 TUBGCP6Q96RT7 1819 aa31.58■■■□□ 2.65
HOXC9-201ENST00000303450 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.57■■■□□ 2.64
HOXC9-201ENST00000303450 PSDA5PKW4 1024 aaPredicted RBP31.57■■■□□ 2.64
HOXC9-201ENST00000303450 SMIM5Q71RC9 77 aa31.57■■■□□ 2.64
HOXC9-201ENST00000303450 AMIGO3Q86WK7 504 aa31.57■■■□□ 2.64
HOXC9-201ENST00000303450 FLAD1Q8NFF5 587 aa31.57■■■□□ 2.64
HOXC9-201ENST00000303450 ZNF330Q9Y3S2 320 aaPredicted RBP31.57■■■□□ 2.64
HOXC9-201ENST00000303450 TRAPPC3LQ5T215 181 aa31.56■■■□□ 2.64
HOXC9-201ENST00000303450 NPM2Q86SE8 214 aaKnown RBP31.56■■■□□ 2.64
HOXC9-201ENST00000303450 ERBB4Q15303 1308 aa31.56■■■□□ 2.64
HOXC9-201ENST00000303450 PNPLA7Q6ZV29 1317 aa31.56■■■□□ 2.64
HOXC9-201ENST00000303450 NBPF26B4DH59 902 aa31.55■■■□□ 2.64
HOXC9-201ENST00000303450 IL6STP40189 918 aaPredicted RBP31.55■■■□□ 2.64
HOXC9-201ENST00000303450 NBPF10Q6P3W6 841 aaKnown RBP31.55■■■□□ 2.64
HOXC9-201ENST00000303450 NBPF15Q8N660 670 aa31.55■■■□□ 2.64
HOXC9-201ENST00000303450 QSER1Q2KHR3 1735 aa31.55■■■□□ 2.64
HOXC9-201ENST00000303450 ADRA2BP18089 450 aa31.54■■■□□ 2.64
HOXC9-201ENST00000303450 MSH5O43196 834 aa31.54■■■□□ 2.64
HOXC9-201ENST00000303450 VAMP4O75379 141 aa31.54■■■□□ 2.64
HOXC9-201ENST00000303450 CCDC30Q5VVM6 783 aa31.54■■■□□ 2.64
HOXC9-201ENST00000303450 MYL6BP14649 208 aa31.53■■■□□ 2.64
HOXC9-201ENST00000303450 EIF5P55010 431 aaKnown RBP31.53■■■□□ 2.64
HOXC9-201ENST00000303450 COL23A1Q86Y22 540 aaPredicted RBP31.52■■■□□ 2.64
HOXC9-201ENST00000303450 CHPF2Q9P2E5 772 aa31.52■■■□□ 2.64
HOXC9-201ENST00000303450 COL15A1P39059 1388 aa31.51■■■□□ 2.64
HOXC9-201ENST00000303450 ARHGEF1Q92888 912 aaKnown RBP31.51■■■□□ 2.63
HOXC9-201ENST00000303450 DBF4Q9UBU7 674 aaPredicted RBP31.51■■■□□ 2.63
HOXC9-201ENST00000303450 PDIA6Q15084 440 aa31.5■■■□□ 2.63
HOXC9-201ENST00000303450 DDX21Q9NR30 783 aaKnown RBP eCLIP31.5■■■□□ 2.63
HOXC9-201ENST00000303450 A0A087WZG4 1122 aa31.49■■■□□ 2.63
HOXC9-201ENST00000303450 RFC4P35249 363 aa31.49■■■□□ 2.63
HOXC9-201ENST00000303450 ANXA1P04083 346 aa31.49■■■□□ 2.63
HOXC9-201ENST00000303450 PROSER3Q2NL68 480 aa31.49■■■□□ 2.63
HOXC9-201ENST00000303450 ARXQ96QS3 562 aa31.49■■■□□ 2.63
HOXC9-201ENST00000303450 STK31Q9BXU1 1019 aa31.49■■■□□ 2.63
HOXC9-201ENST00000303450 PDGFDQ9GZP0 370 aaPredicted RBP31.48■■■□□ 2.63
HOXC9-201ENST00000303450 TCERG1O14776 1098 aaKnown RBP31.46■■■□□ 2.63
HOXC9-201ENST00000303450 HYPKQ9NX55 129 aa31.45■■■□□ 2.63
HOXC9-201ENST00000303450 ZPR1O75312 459 aa31.44■■■□□ 2.62
HOXC9-201ENST00000303450 CT47B1P0C2W7 299 aaPredicted RBP31.44■■■□□ 2.62
HOXC9-201ENST00000303450 DZIP3Q86Y13 1208 aaKnown RBP31.44■■■□□ 2.62
HOXC9-201ENST00000303450 TBC1D2BQ9UPU7 963 aa31.44■■■□□ 2.62
HOXC9-201ENST00000303450 C4AP0C0L4 1744 aa31.44■■■□□ 2.62
HOXC9-201ENST00000303450 LRP10Q7Z4F1 713 aa31.43■■■□□ 2.62
HOXC9-201ENST00000303450 CASZ1Q86V15 1759 aa31.42■■■□□ 2.62
HOXC9-201ENST00000303450 SLC16A10Q8TF71 515 aa31.42■■■□□ 2.62
HOXC9-201ENST00000303450 ZNF428Q96B54 188 aa31.42■■■□□ 2.62
HOXC9-201ENST00000303450 NARFQ9UHQ1 456 aa31.42■■■□□ 2.62
HOXC9-201ENST00000303450 SLC4A2P04920 1241 aa31.41■■■□□ 2.62
HOXC9-201ENST00000303450 SRP68Q9UHB9 627 aaKnown RBP31.41■■■□□ 2.62
HOXC9-201ENST00000303450 USP42Q9H9J4 1324 aaKnown RBP31.41■■■□□ 2.62
HOXC9-201ENST00000303450 AIMP1Q12904 312 aaKnown RBP31.4■■■□□ 2.62
HOXC9-201ENST00000303450 KIF6Q6ZMV9 814 aa31.39■■■□□ 2.62
HOXC9-201ENST00000303450 COPS6Q7L5N1 327 aa31.39■■■□□ 2.62
HOXC9-201ENST00000303450 XAGE3Q8WTP9 111 aa31.39■■■□□ 2.62
HOXC9-201ENST00000303450 USPL1Q5W0Q7 1092 aa31.39■■■□□ 2.61
HOXC9-201ENST00000303450 TTLL7Q6ZT98 887 aa31.39■■■□□ 2.61
HOXC9-201ENST00000303450 CACNA1FO60840 1977 aa31.38■■■□□ 2.61
HOXC9-201ENST00000303450 ZBTB7AO95365 584 aa31.38■■■□□ 2.61
HOXC9-201ENST00000303450 PHAXQ9H814 394 aaKnown RBP31.37■■■□□ 2.61
HOXC9-201ENST00000303450 GYS1P13807 737 aa31.36■■■□□ 2.61
HOXC9-201ENST00000303450 CAMTA2O94983 1202 aa31.35■■■□□ 2.61
HOXC9-201ENST00000303450 MTFR1LQ9H019 292 aa31.35■■■□□ 2.61
HOXC9-201ENST00000303450 ALDH1L2Q3SY69 923 aa31.34■■■□□ 2.61
HOXC9-201ENST00000303450 MSL1Q68DK7 614 aa31.34■■■□□ 2.61
HOXC9-201ENST00000303450 SSH1Q8WYL5 1049 aa31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms