RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 TTC5Q8N0Z6 440 aa31.94■■■□□ 2.7
SSBP4-201ENST00000270061 RTF1Q92541 710 aaKnown RBP31.94■■■□□ 2.7
SSBP4-201ENST00000270061 TRAPPC3LQ5T215 181 aa31.94■■■□□ 2.7
SSBP4-201ENST00000270061 RCAN3Q9UKA8 241 aa31.94■■■□□ 2.7
SSBP4-201ENST00000270061 MAPK8IP3Q9UPT6 1336 aa31.93■■■□□ 2.7
SSBP4-201ENST00000270061 CRKLP46109 303 aaKnown RBP31.93■■■□□ 2.7
SSBP4-201ENST00000270061 WDR63Q8IWG1 891 aa31.93■■■□□ 2.7
SSBP4-201ENST00000270061 DCAF8L1A6NGE4 600 aa31.92■■■□□ 2.7
SSBP4-201ENST00000270061 RPS6KA4O75676 772 aa31.92■■■□□ 2.7
SSBP4-201ENST00000270061 KLHL34Q8N239 644 aa31.92■■■□□ 2.7
SSBP4-201ENST00000270061 ADRA2BP18089 450 aa31.91■■■□□ 2.7
SSBP4-201ENST00000270061 DNAJC10Q8IXB1 793 aa31.91■■■□□ 2.7
SSBP4-201ENST00000270061 GOLGB1Q14789 3259 aaKnown RBP31.91■■■□□ 2.7
SSBP4-201ENST00000270061 TMPOP42166 694 aaKnown RBP31.9■■■□□ 2.7
SSBP4-201ENST00000270061 RRP7AQ9Y3A4 280 aaKnown RBP31.9■■■□□ 2.7
SSBP4-201ENST00000270061 ZNF790Q6PG37 636 aa31.89■■■□□ 2.7
SSBP4-201ENST00000270061 VSIG10Q8N0Z9 540 aa31.89■■■□□ 2.7
SSBP4-201ENST00000270061 C4AP0C0L4 1744 aa31.89■■■□□ 2.7
SSBP4-201ENST00000270061 HTATSF1O43719 755 aaKnown RBP31.89■■■□□ 2.69
SSBP4-201ENST00000270061 MCM10Q7L590 875 aa31.89■■■□□ 2.69
SSBP4-201ENST00000270061 NEUROD2Q15784 382 aa31.88■■■□□ 2.69
SSBP4-201ENST00000270061 ARHGEF1Q92888 912 aaKnown RBP31.88■■■□□ 2.69
SSBP4-201ENST00000270061 SPINK5Q9NQ38 1064 aaPredicted RBP31.87■■■□□ 2.69
SSBP4-201ENST00000270061 RFC4P35249 363 aa31.86■■■□□ 2.69
SSBP4-201ENST00000270061 BTBD11A6QL63 1104 aa31.86■■■□□ 2.69
SSBP4-201ENST00000270061 CYP19A1P11511 503 aaPredicted RBP31.85■■■□□ 2.69
SSBP4-201ENST00000270061 INTS5Q6P9B9 1019 aaKnown RBP31.85■■■□□ 2.69
SSBP4-201ENST00000270061 CCDC87Q9NVE4 849 aa31.85■■■□□ 2.69
SSBP4-201ENST00000270061 DCTN1Q14203 1278 aa31.84■■■□□ 2.69
SSBP4-201ENST00000270061 ZNF496Q96IT1 587 aaPredicted RBP31.84■■■□□ 2.69
SSBP4-201ENST00000270061 HEG1Q9ULI3 1381 aa31.82■■■□□ 2.68
SSBP4-201ENST00000270061 NFE2L2Q16236 605 aa31.81■■■□□ 2.68
SSBP4-201ENST00000270061 FMNL2Q96PY5 1086 aa31.81■■■□□ 2.68
SSBP4-201ENST00000270061 TRIM35Q9UPQ4 493 aa31.81■■■□□ 2.68
SSBP4-201ENST00000270061 IRX6P78412 446 aaPredicted RBP31.8■■■□□ 2.68
SSBP4-201ENST00000270061 NLGN1Q8N2Q7 840 aa31.8■■■□□ 2.68
SSBP4-201ENST00000270061 STARD3NLO95772 234 aa31.79■■■□□ 2.68
SSBP4-201ENST00000270061 RRP1P56182 461 aaKnown RBP31.79■■■□□ 2.68
SSBP4-201ENST00000270061 RIPK4P57078 832 aa31.79■■■□□ 2.68
SSBP4-201ENST00000270061 TEX13AQ9BXU3 409 aaPredicted RBP31.79■■■□□ 2.68
SSBP4-201ENST00000270061 GYS1P13807 737 aa31.78■■■□□ 2.68
SSBP4-201ENST00000270061 NLGN2Q8NFZ4 835 aa31.78■■■□□ 2.68
SSBP4-201ENST00000270061 KCNQ3O43525 872 aa31.77■■■□□ 2.68
SSBP4-201ENST00000270061 ZBTB1Q9Y2K1 713 aa31.77■■■□□ 2.68
SSBP4-201ENST00000270061 SOS1Q07889 1333 aaPredicted RBP31.77■■■□□ 2.68
SSBP4-201ENST00000270061 MMP10P09238 476 aa31.76■■■□□ 2.68
SSBP4-201ENST00000270061 CD2APQ9Y5K6 639 aa31.76■■■□□ 2.68
SSBP4-201ENST00000270061 IL16Q14005 1332 aa31.76■■■□□ 2.67
SSBP4-201ENST00000270061 USP42Q9H9J4 1324 aaKnown RBP31.75■■■□□ 2.67
SSBP4-201ENST00000270061 TAF7Q15545 349 aaPredicted RBP31.75■■■□□ 2.67
SSBP4-201ENST00000270061 SRP68Q9UHB9 627 aaKnown RBP31.73■■■□□ 2.67
SSBP4-201ENST00000270061 MYH16Q9H6N6 1097 aa31.73■■■□□ 2.67
SSBP4-201ENST00000270061 COL15A1P39059 1388 aa31.72■■■□□ 2.67
SSBP4-201ENST00000270061 ZPR1O75312 459 aa31.71■■■□□ 2.67
SSBP4-201ENST00000270061 CANXP27824 592 aaKnown RBP31.71■■■□□ 2.67
SSBP4-201ENST00000270061 KDM3BQ7LBC6 1761 aa31.7■■■□□ 2.66
SSBP4-201ENST00000270061 GPR162Q16538 588 aa31.69■■■□□ 2.66
SSBP4-201ENST00000270061 CHD4Q14839 1912 aa31.69■■■□□ 2.66
SSBP4-201ENST00000270061 THUMPD2Q9BTF0 503 aaKnown RBP31.68■■■□□ 2.66
SSBP4-201ENST00000270061 PPP4R2Q9NY27 417 aa31.68■■■□□ 2.66
SSBP4-201ENST00000270061 MIS18AQ9NYP9 233 aa31.68■■■□□ 2.66
SSBP4-201ENST00000270061 KIF13BQ9NQT8 1826 aa31.68■■■□□ 2.66
SSBP4-201ENST00000270061 USPL1Q5W0Q7 1092 aa31.67■■■□□ 2.66
SSBP4-201ENST00000270061 PELP1Q8IZL8 1130 aaKnown RBP31.67■■■□□ 2.66
SSBP4-201ENST00000270061 NARFQ9UHQ1 456 aa31.67■■■□□ 2.66
SSBP4-201ENST00000270061 PARP3Q9Y6F1 533 aa31.67■■■□□ 2.66
SSBP4-201ENST00000270061 SNRPA1P09661 255 aaKnown RBP31.66■■■□□ 2.66
SSBP4-201ENST00000270061 EIF5P55010 431 aaKnown RBP31.66■■■□□ 2.66
SSBP4-201ENST00000270061 LMOD3Q0VAK6 560 aa31.66■■■□□ 2.66
SSBP4-201ENST00000270061 USP16Q9Y5T5 823 aa31.64■■■□□ 2.66
SSBP4-201ENST00000270061 A1BGP04217 495 aa31.63■■■□□ 2.65
SSBP4-201ENST00000270061 CALD1Q05682 793 aaKnown RBP31.63■■■□□ 2.65
SSBP4-201ENST00000270061 A0A087WZG4 1122 aa31.63■■■□□ 2.65
SSBP4-201ENST00000270061 PRAMEF22A3QJZ6 481 aa31.63■■■□□ 2.65
SSBP4-201ENST00000270061 IL6STP40189 918 aaPredicted RBP31.63■■■□□ 2.65
SSBP4-201ENST00000270061 ZNF330Q9Y3S2 320 aaPredicted RBP31.63■■■□□ 2.65
SSBP4-201ENST00000270061 NPM2Q86SE8 214 aaKnown RBP31.62■■■□□ 2.65
SSBP4-201ENST00000270061 LAMB4A4D0S4 1761 aa31.61■■■□□ 2.65
SSBP4-201ENST00000270061 CT47B1P0C2W7 299 aaPredicted RBP31.61■■■□□ 2.65
SSBP4-201ENST00000270061 YY1P25490 414 aa31.61■■■□□ 2.65
SSBP4-201ENST00000270061 GOLGA6L2Q8N9W4 650 aaPredicted RBP31.59■■■□□ 2.65
SSBP4-201ENST00000270061 C10orf71Q711Q0 1435 aa31.59■■■□□ 2.65
SSBP4-201ENST00000270061 FANCIQ9NVI1 1328 aa31.59■■■□□ 2.65
SSBP4-201ENST00000270061 DDR1Q08345 913 aa31.58■■■□□ 2.65
SSBP4-201ENST00000270061 N4BP2Q86UW6 1770 aaPredicted RBP31.58■■■□□ 2.65
SSBP4-201ENST00000270061 TM4SF1P30408 202 aa31.58■■■□□ 2.65
SSBP4-201ENST00000270061 SCN7AQ01118 1682 aa31.57■■■□□ 2.64
SSBP4-201ENST00000270061 AFDNP55196 1824 aaKnown RBP31.57■■■□□ 2.64
SSBP4-201ENST00000270061 YBX3P16989 372 aaKnown RBP eCLIP31.56■■■□□ 2.643e-6■■□□□ 12.9
SSBP4-201ENST00000270061 BCL2L12Q9HB09 334 aa31.56■■■□□ 2.64
SSBP4-201ENST00000270061 EIF4A1P60842 406 aaKnown RBP31.56■■■□□ 2.64
SSBP4-201ENST00000270061 TBC1D2BQ9UPU7 963 aa31.56■■■□□ 2.64
SSBP4-201ENST00000270061 KIAA1551Q9HCM1 1747 aa31.55■■■□□ 2.64
SSBP4-201ENST00000270061 POLRMTO00411 1230 aaKnown RBP31.55■■■□□ 2.64
SSBP4-201ENST00000270061 PIP4K2AP48426 406 aaPredicted RBP31.55■■■□□ 2.64
SSBP4-201ENST00000270061 TSPYL4Q9UJ04 414 aa31.55■■■□□ 2.64
SSBP4-201ENST00000270061 GRIN3BO60391 1043 aa31.54■■■□□ 2.64
SSBP4-201ENST00000270061 TGFB2P61812 414 aa31.54■■■□□ 2.64
SSBP4-201ENST00000270061 NFIXQ14938 502 aa31.54■■■□□ 2.64
SSBP4-201ENST00000270061 PXDNLA1KZ92 1463 aa31.53■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms