RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ITGADQ13349 1161 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 DMC1Q14565 340 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 CLCA4Q14CN2 919 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 SORCS1Q8WY21 1168 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 VMP1Q96GC9 406 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 NECTIN3Q9NQS3 549 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 VPS4AQ9UN37 437 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 CARNS1A5YM72 827 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 PPIBP23284 216 aaKnown RBP21.95■■□□□ 1.1
VPS53-211ENST00000571805 PPM1AP35813 382 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 PRLHRP49683 370 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 PHEXP78562 749 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 KCNC4Q03721 635 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 ANXA8L1Q5VT79 327 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 NAGSQ8N159 534 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 VPS37AQ8NEZ2 397 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 CYB5D2Q8WUJ1 264 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 GLYATL1Q969I3 302 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 VPS35Q96QK1 796 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 ZNF300Q96RE9 604 aaPredicted RBP21.95■■□□□ 1.1
VPS53-211ENST00000571805 SIGLEC11Q96RL6 698 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 CCM2Q9BSQ5 444 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 ACOT13Q9NPJ3 140 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 SPHK2Q9NRA0 654 aa21.95■■□□□ 1.1
VPS53-211ENST00000571805 SUV39H1O43463 412 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 RGS10O43665 173 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 MRPS14O60783 128 aaKnown RBP21.94■■□□□ 1.1
VPS53-211ENST00000571805 FKTNO75072 461 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 ATG13O75143 517 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PDHA2P29803 388 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 KRT20P35900 424 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 ATP1A4Q13733 1029 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 SPIN4Q56A73 249 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 DDX59Q5T1V6 619 aaKnown RBP eCLIP21.94■■□□□ 1.1
VPS53-211ENST00000571805 SLCO4C1Q6ZQN7 724 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 KIAA0907Q7Z7F0 614 aaPredicted RBP21.94■■□□□ 1.1
VPS53-211ENST00000571805 SLCO6A1Q86UG4 719 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 FAM124AQ86V42 546 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 NDNFQ8TB73 568 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 NEIL2Q969S2 332 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 SAMD11Q96NU1 681 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 MTG2Q9H4K7 406 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 AKIP1Q9NQ31 210 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 RAD18Q9NS91 495 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 CORO2BQ9UQ03 480 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PADI2Q9Y2J8 665 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 AP1M2Q9Y6Q5 423 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PCM1Q15154 2024 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 CLDN25C9JDP6 229 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PCDHGA12O60330 932 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 FAM20BO75063 409 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PCGF2P35227 344 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 ZNF846Q147U1 533 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PROX2Q3B8N5 592 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 BTLAQ7Z6A9 289 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 GPR156Q8NFN8 814 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 APH1BQ8WW43 257 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 CCNB1IP1Q9NPC3 277 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 RASSF1Q9NS23 344 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 ADPRHL2Q9NX46 363 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 MAPRE3Q9UPY8 281 aa21.94■■□□□ 1.1
VPS53-211ENST00000571805 PRRC2BQ5JSZ5 2229 aaKnown RBP21.93■■□□□ 1.1
VPS53-211ENST00000571805 CXCL14O95715 111 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 NTRK1P04629 796 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 AQP1P29972 269 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 TIA1P31483 386 aaKnown RBP eCLIP21.93■■□□□ 1.1
VPS53-211ENST00000571805 HPCAL1P37235 193 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 MVDP53602 400 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 WDR5P61964 334 aaKnown RBP21.93■■□□□ 1.1
VPS53-211ENST00000571805 RPS13P62277 151 aaKnown RBP21.93■■□□□ 1.1
VPS53-211ENST00000571805 OCA2Q04671 838 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 TMEM115Q12893 351 aaPredicted RBP21.93■■□□□ 1.1
VPS53-211ENST00000571805 CAMK2GQ13555 558 aaPredicted RBP21.93■■□□□ 1.1
VPS53-211ENST00000571805 RGS21Q2M5E4 152 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 ZNF284Q2VY69 593 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 ZNF385BQ569K4 471 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 CCDC81Q6ZN84 652 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 LINC00299Q6ZSB3 139 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 DPPA4Q7L190 304 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 TMCO5AQ8N6Q1 288 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 DOHHQ9BU89 302 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 GPATCH2Q9NW75 528 aa21.93■■□□□ 1.1
VPS53-211ENST00000571805 FUOMA2VDF0 154 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 MGAT4DA6NG13 374 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 RNASET2O00584 256 aaKnown RBP21.92■■□□□ 1.1
VPS53-211ENST00000571805 PCDH7O60245 1069 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 MOSPD3O75425 235 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 FADS2O95864 444 aaKnown RBP21.92■■□□□ 1.1
VPS53-211ENST00000571805 POLR2EP19388 210 aaKnown RBP21.92■■□□□ 1.1
VPS53-211ENST00000571805 MNX1P50219 401 aaPredicted RBP21.92■■□□□ 1.1
VPS53-211ENST00000571805 LY6G5CQ5SRR4 150 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 PRSS48Q7RTY5 328 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 P2RY8Q86VZ1 359 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 ENTHD1Q8IYW4 607 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 HRASLS5Q96KN8 279 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 GABARAPL3Q9BY60 117 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 ALOXE3Q9BYJ1 711 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 PCDHGB3Q9Y5G1 929 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 RRM2P31350 389 aa21.92■■□□□ 1.1
VPS53-211ENST00000571805 MVKQ03426 396 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms