RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CD47Q08722 323 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GAB1Q13480 694 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RAPSNQ13702 412 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SHHQ15465 462 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SYT16Q17RD7 645 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CMPK2Q5EBM0 449 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CCNYL2Q5T2Q4 361 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 HENMT1Q5T8I9 393 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TMEM236Q5W0B7 351 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 FBXO46Q6PJ61 603 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KIAA1324Q6UXG2 1013 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PROSER1Q86XN7 944 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TMEFF1Q8IYR6 380 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 C8orf59Q8N0T1 100 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ARL10Q8N8L6 244 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TMEM145Q8NBT3 493 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 VOPP1Q96AW1 172 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 HSPBAP1Q96EW2 488 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 UHRF1Q96T88 793 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CLMPQ9H6B4 373 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KAT8Q9H7Z6 458 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GULP1Q9UBP9 304 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RTTNQ86VV8 2226 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SLC9A3R1O14745 358 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 NARSO43776 548 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PFDN1O60925 122 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KAT7O95251 611 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ATE1O95260 518 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RASAL1O95294 804 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 LATS1O95835 1130 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PRNPP04156 253 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 FCGR1AP12314 374 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TGFBR1P36897 503 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 MMP12P39900 470 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 DCTP40126 519 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RANBP1P43487 201 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 HBA1P69905 142 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RAB39AQ14964 217 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 HIST2H2ACQ16777 129 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ANKDD1AQ495B1 522 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 C9orf64Q5T6V5 341 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 HIST2H2AA3Q6FI13 130 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 AHSA2Q719I0 299 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 LRRC70Q7Z2Q7 622 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 COMMD6Q7Z4G1 85 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 AMZ2Q86W34 360 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TRAM1L1Q8N609 369 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF513Q8N8E2 541 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 VPS37AQ8NEZ2 397 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 OR10G6Q8NH81 332 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 OTULINQ96BN8 352 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PPCDCQ96CD2 204 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CMTM7Q96FZ5 175 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 C1QTNF3Q9BXJ4 246 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SEZ6LQ9BYH1 1024 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CPEB1Q9BZB8 566 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 AMBRA1Q9C0C7 1298 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CRISPLD2Q9H0B8 497 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 NKX2-4Q9H2Z4 354 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KCNK12Q9HB15 430 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SERHLQ9NQF3 203 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 MRGBPQ9NV56 204 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 FBXL12Q9NXK8 326 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SELENONQ9NZV5 590 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 DPP7Q9UHL4 492 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GMPPBQ9Y5P6 360 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SNX5Q9Y5X3 404 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CEPT1Q9Y6K0 416 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ABCA7Q8IZY2 2146 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GVINP1Q7Z2Y8 2422 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 UNC13CQ8NB66 2214 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RP1L1Q8IWN7 2480 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SMIM31A0A1B0GVY4 71 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KRBA1A5PL33 1030 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF860A6NHJ4 632 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ISM1B1AKI9 464 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KIAA0355O15063 1070 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PRAMEF10O60809 474 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 INMTO95050 263 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 APOL3O95236 402 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SOX14O95416 240 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 C1orf105O95561 183 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 NPPBP16860 134 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CDH2P19022 906 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 IGFBP5P24593 272 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 MAPK1P28482 360 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 RRM2P31350 389 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GJA4P35212 333 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ARHGDIAP52565 204 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 MANFP55145 182 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CTBSQ01459 385 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SPIBQ01892 262 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 TAP2Q03519 686 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 SGCGQ13326 291 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ATP1A4Q13733 1029 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PLEKHS1Q5SXH7 462 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 KIAA1211LQ6NV74 962 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PARM1Q6UWI2 310 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ERN2Q76MJ5 926 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 THAP5Q7Z6K1 395 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms