RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PRH1P02810 166 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 HERC3Q15034 1050 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 EPGNQ6UW88 154 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 RAB2BQ8WUD1 216 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 SLCO2A1Q92959 643 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 PRAP1Q96NZ9 151 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 SLC45A1Q9Y2W3 748 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 NPIPA5E9PKD4 350 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 PCLAFQ15004 111 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 METTL7AQ9H8H3 244 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 NPIPA1Q9UND3 350 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 HMGN1P05114 100 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 PGGT1BP53609 377 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 ABCA11PQ4W5N1 156 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 UCKL1Q9NWZ5 548 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 LOC100509620A0A075B734 347 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 TLX2O43763 284 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 PITX1P78337 314 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 MLLT1Q03111 559 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 PDCD4Q53EL6 469 aaKnown RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF101Q8IZC7 436 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 CD244Q9BZW8 370 aa16.66■□□□□ 0.26
PTPRF-209ENST00000438120 LYARQ9NX58 379 aaKnown RBP16.66■□□□□ 0.26
PTPRF-209ENST00000438120 OR1E2P47887 323 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 TSTQ16762 297 aaKnown RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 PPP1R3AQ16821 1122 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 CCDC36Q8IYA8 594 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 OR9A1PQ8NGU1 263 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 CRELD1Q96HD1 420 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 NLE1Q9NVX2 485 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 EIF3KQ9UBQ5 218 aaKnown RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SHPRHQ149N8 1683 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 HYKKA2RU49 373 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 ACOX3O15254 700 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 FECHP22830 423 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SCGB2B2Q4G0G5 96 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 C4orf46Q504U0 113 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SWT1Q5T5J6 900 aaKnown RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 HMGN2P46Q86SG4 172 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 C1orf216Q8TAB5 229 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SLC29A3Q9BZD2 475 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 OR8D2Q9GZM6 311 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SDHAF3Q9NRP4 125 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 NKX1-2Q9UD57 310 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF639Q9UID6 485 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 DLGAP4Q9Y2H0 992 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 ORC5O43913 435 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 TACSTD2P09758 323 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 DNASE1L3Q13609 305 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF572Q7Z3I7 529 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 CYP8B1Q9UNU6 501 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 PIRO00625 290 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 CREG1O75629 220 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SLC35F1Q5T1Q4 408 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 CWF19L1Q69YN2 538 aaKnown RBP16.65■□□□□ 0.26
PTPRF-209ENST00000438120 JAGN1Q8N5M9 183 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 FCGR1BQ92637 280 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 BIRC7Q96CA5 298 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 MOCOSQ96EN8 888 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 LRCH3Q96II8 777 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 KCTD7Q96MP8 289 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 TUBGCP5Q96RT8 1024 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 UCK2Q9BZX2 261 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SMURF2Q9HAU4 748 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 IL21RQ9HBE5 538 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 POFUT2Q9Y2G5 429 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 S100A6P06703 90 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 GALTP07902 379 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 PITPNAQ00169 270 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 DECR1Q16698 335 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 CNPY1Q3B7I2 92 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 SLC9B2Q86UD5 537 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 PYURFQ96I23 114 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 IGSF21Q96ID5 467 aa16.65■□□□□ 0.26
PTPRF-209ENST00000438120 COQ9O75208 318 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 PCSK2P16519 638 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ADAM17P78536 824 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 INCA1Q0VD86 236 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF234Q14588 700 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 UPP1Q16831 310 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 GKN2Q86XP6 184 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 NPAS3Q8IXF0 933 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ANKFN1Q8N957 763 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 GATSQ8NAP1 163 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 KLHL6Q8WZ60 621 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 KIAA1191Q96A73 305 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 PCYT2Q99447 389 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 MNTQ99583 582 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 LOC100130705A0A1B0GUX0 176 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 KLF8O95600 359 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-209ENST00000438120 CHRM1P11229 460 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-209ENST00000438120 HNF1BP35680 557 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF678Q5SXM1 525 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 SDR16C5Q8N3Y7 309 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ZNF641Q96N77 438 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-209ENST00000438120 GNG8Q9UK08 70 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 ITGA10O75578 1167 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 KLK3P07288 261 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-209ENST00000438120 GSTT2BP0CG30 244 aa16.64■□□□□ 0.25
PTPRF-209ENST00000438120 RAB30Q15771 203 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms