RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 KCNS2Q9ULS6 477 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 LOC100130705A0A1B0GUX0 176 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 SCNN1AP37088 669 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 TEAD2Q15562 447 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 RUNDC3AQ59EK9 446 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 LRRC66Q68CR7 880 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 C10orf82Q8WW14 230 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 SDHAF3Q9NRP4 125 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 GRHPRQ9UBQ7 328 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 SMCO3A2RU48 225 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 OTOL1A6NHN0 477 aaPredicted RBP13.32□□□□□ -0.28
COL4A1-201ENST00000375820 H3BSA7 217 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 IFNA21P01568 189 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 MSL3P1P0C860 447 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 RNF130Q86XS8 419 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 ABHD5Q8WTS1 349 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 TMEM41AQ96HV5 264 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 NUDT15Q9NV35 164 aa13.32□□□□□ -0.28
COL4A1-201ENST00000375820 H0YGN5 161 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 POP7O75817 140 aaKnown RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 SLC18A2Q05940 514 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 NADK2Q4G0N4 442 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 GRASPQ7Z6J2 395 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 NLGN4XQ8N0W4 816 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 PKP2Q99959 881 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 OR51I1Q9H343 314 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 SOX1O00570 391 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 CSF2P04141 144 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 SLC6A4P31645 630 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 PNLIPRP1P54315 467 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 PER3P56645 1201 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 TMEM236Q5W0B7 351 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 LBX2Q6XYB7 198 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 SLAIN1Q8ND83 568 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 RAB2BQ8WUD1 216 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 LGALS13Q9UHV8 139 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF670-ZNF695F2Z2N8 137 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 G6PDP11413 515 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 EZH1Q92800 747 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 NPLQ9BXD5 320 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 NUSAP1Q9BXS6 441 aaKnown RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 OXSMQ9NWU1 459 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 ABCG2Q9UNQ0 655 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 C14orf166Q9Y224 244 aaKnown RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 A0A1B0GV50 99 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 FUT2Q10981 343 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 TPRG1LQ5T0D9 272 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 LRRTM4Q86VH4 590 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 OTUB2Q96DC9 234 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 XKR8Q9H6D3 395 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 IGSF9Q9P2J2 1179 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 NCDNQ9UBB6 729 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 AGPSO00116 658 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 POLR2CP19387 275 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 AGTR2P50052 363 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 FAM76BQ5HYJ3 339 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 FRG2Q64ET8 278 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 GLB1L3Q8NCI6 653 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 CDKN2AIPNLQ96HQ2 116 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 HSH2DQ96JZ2 352 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 FRG2BQ96QU4 278 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 MND1Q9BWT6 205 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 SLC32A1Q9H598 525 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 ENY2Q9NPA8 101 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 TAS2R1Q9NYW7 299 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 NKX1-2Q9UD57 310 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-201ENST00000375820 IFT52Q9Y366 437 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 PCDHB11Q9Y5F2 797 aa13.31□□□□□ -0.28
COL4A1-201ENST00000375820 M0QX08 132 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 NUAK1O60285 661 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 PRPS1L1P21108 318 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 PTX3P26022 381 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 GJA8P48165 433 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CLRN1P58418 232 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 LASP1Q14847 261 aaKnown RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 DUOXA1Q1HG43 343 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SPRYD7Q5W111 196 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 THAP6Q8TBB0 222 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 CCDC107Q8WV48 283 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 OR8D2Q9GZM6 311 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SMURF2Q9HAU4 748 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 YIPF1Q9Y548 306 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 HS3ST4Q9Y661 456 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 EDNRBP24530 442 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 AFF1P51825 1210 aaKnown RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 RHDQ02161 417 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 PIGFQ07326 219 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 PRRT3Q5FWE3 981 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 KIAA0930Q6ICG6 404 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ANO7Q6IWH7 933 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF227Q86WZ6 799 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 TMEM126BQ8IUX1 230 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 GEMIN6Q8WXD5 167 aaKnown RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 C12orf43Q96C57 262 aaKnown RBP13.3□□□□□ -0.28
COL4A1-201ENST00000375820 ABCD2Q9UBJ2 740 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 LAMP5Q9UJQ1 280 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 SPEF1Q9Y4P9 236 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 LMTK2Q8IWU2 1503 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 A0A0G2JPF8 293 aa13.3□□□□□ -0.28
COL4A1-201ENST00000375820 HNRNPCL3B7ZW38 293 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms