RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 MAGEA11P43364 429 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TGM4P49221 684 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 CSNK2BP67870 215 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 KCNJ10P78508 379 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 ANGPTL8Q6UXH0 198 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 SYT12Q8IV01 421 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 MAP6Q96JE9 813 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 SLC30A2Q9BRI3 323 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 TM6SF2Q9BZW4 377 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 GKN1Q9NS71 199 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 CCDC59Q9P031 241 aaKnown RBP13.23□□□□□ -0.29
USP49-201ENST00000373006 A3GALT2U3KPV4 340 aa13.23□□□□□ -0.29
USP49-201ENST00000373006 A0A1W2PQ72 361 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 SUV39H1O43463 412 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 AOC2O75106 756 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 TSPAN9O75954 239 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 COX7A2P14406 83 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ACPPP15309 386 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 HOXB6P17509 224 aaKnown RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 GKP32189 559 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 DDX39BQ13838 428 aaKnown RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 PXDC1Q5TGL8 231 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 NOXRED1Q6NXP6 359 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 USP50Q70EL3 339 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 CCDC190Q86UF4 302 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 B3GNT7Q8NFL0 401 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 VANGL1Q8TAA9 524 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 TESCQ96BS2 214 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ST6GAL2Q96JF0 529 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 COL21A1Q96P44 957 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 OR2A14Q96R47 310 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CCM2Q9BSQ5 444 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CNPPD1Q9BV87 410 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 MMP28Q9H239 520 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CCDC177Q9NQR7 707 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 PCDHGB3Q9Y5G1 929 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 OAZ2O95190 189 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 SLC10A3P09131 477 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 GPX2P18283 190 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ITPKAP23677 461 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 HMGCLP35914 325 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 HTR2BP41595 481 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ARF5P84085 180 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 SMARCB1Q12824 385 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ZNF177Q13360 481 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 UGT8Q16880 541 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 TBRG1Q3YBR2 411 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 TRIM60Q495X7 471 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ARMC4Q5T2S8 1044 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ZNF517Q6ZMY9 492 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 TSEN54Q7Z6J9 526 aaKnown RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP49-201ENST00000373006 RBFAQ8N0V3 343 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 UBASH3BQ8TF42 649 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 SH3KBP1Q96B97 665 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 GABARAPL3Q9BY60 117 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 TPT1P8Q9HAU6 139 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 IMPAD1Q9NX62 359 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 FZD4Q9ULV1 537 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 SATB2Q9UPW6 733 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 C12orf71A8MTZ7 269 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 GAPDHSO14556 408 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 GJB5O95377 273 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CD160O95971 181 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 ANXA5P08758 320 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 IRF1P10914 325 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 LAMP1P11279 417 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 WEE1P30291 646 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CDH4P55283 916 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CDH12P55289 794 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 CD83Q01151 205 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 PPIGQ13427 754 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP49-201ENST00000373006 NFATC2Q13469 925 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 GPRC6AQ5T6X5 926 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 OR9Q2Q8NGE9 314 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 FUBP3Q96I24 572 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP49-201ENST00000373006 MGLLQ99685 303 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 IL26Q9NPH9 171 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 TIGARQ9NQ88 270 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 C12orf4Q9NQ89 552 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 DUSP12Q9UNI6 340 aa13.22□□□□□ -0.29
USP49-201ENST00000373006 MN1Q10571 1320 aaPredicted RBP13.22□□□□□ -0.29
USP49-201ENST00000373006 CLDN7O95471 211 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 GNG2P59768 71 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 RING1Q06587 406 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 SLAMF1Q13291 335 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 STARD3Q14849 445 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 BAK1Q16611 211 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 CERS6Q6ZMG9 384 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 OR10G2Q8NGC3 310 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 PCNPQ8WW12 178 aaKnown RBP13.21□□□□□ -0.29
USP49-201ENST00000373006 GTPBP3Q969Y2 492 aaKnown RBP13.21□□□□□ -0.29
USP49-201ENST00000373006 SLC32A1Q9H598 525 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 PLCXD1Q9NUJ7 323 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 CRLS1Q9UJA2 301 aa13.21□□□□□ -0.29
USP49-201ENST00000373006 GLTPD2A6NH11 291 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 K7ERQ8 282 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 AMD1P17707 334 aa13.21□□□□□ -0.3
USP49-201ENST00000373006 WNT3P56703 355 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms