RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ELP6Q0PNE2 266 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 DDX39BQ13838 428 aaKnown RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 ZNF284Q2VY69 593 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 CCDC81Q6ZN84 652 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 Q6ZVU0 165 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 CCDC71Q8IV32 467 aaPredicted RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 NAT16Q8N8M0 369 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 FBXO15Q8NCQ5 510 aaPredicted RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 OR2A12Q8NGT7 310 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 GOT1L1Q8NHS2 421 aaPredicted RBP13.78□□□□□ -0.2
CD48-201ENST00000368045 CDC26Q8NHZ8 85 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 NDNFQ8TB73 568 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 BTN2A2Q8WVV5 523 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 SCAMP4Q969E2 229 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 SLC38A4Q969I6 547 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 TPD52L3Q96J77 140 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 FOPNLQ96NB1 174 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 HEPHQ9BQS7 1158 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 RUBCNLQ9H714 662 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 SELENONQ9NZV5 590 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 SLCO3A1Q9UIG8 710 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 DAPK2Q9UIK4 370 aa13.78□□□□□ -0.2
CD48-201ENST00000368045 OBSL1O75147 1896 aa13.77□□□□□ -0.2
CD48-201ENST00000368045 SLC5A10A0PJK1 596 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 UPK3BL1B0FP48 263 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 UPK3BL2E5RIL1 263 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 MTX2O75431 263 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 C1QCP02747 245 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 CTSAP10619 480 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 GGT2P36268 569 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 UGT2B10P36537 528 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 PRLHRP49683 370 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 CCR3P51677 355 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 TUBA1BP68363 451 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 ARHGEF6Q15052 776 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 HIST2H2ACQ16777 129 aaPredicted RBP13.77□□□□□ -0.21
CD48-201ENST00000368045 ASTLQ6HA08 431 aaPredicted RBP13.77□□□□□ -0.21
CD48-201ENST00000368045 TUBA1AQ71U36 451 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 GALNT10Q86SR1 603 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 ENTHD1Q8IYW4 607 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 OR7G3Q8NG95 312 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 MYDGFQ969H8 173 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 OR4K3Q96R72 315 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 CCM2Q9BSQ5 444 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 SLC46A2Q9BY10 475 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 ITPAQ9BY32 194 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 ATAD3AQ9NVI7 634 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 BTBD3Q9Y2F9 522 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 PCDHGA6Q9Y5G7 932 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 MICAL3Q7RTP6 2002 aa13.77□□□□□ -0.21
CD48-201ENST00000368045 A0A1W2PRU2 124 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 FOXE1O00358 373 aaPredicted RBP13.76□□□□□ -0.21
CD48-201ENST00000368045 ZNF197O14709 1029 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 AXIN1O15169 862 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TGM5O43548 720 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 PCDHGA12O60330 932 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 MAN1A2O60476 641 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 SERPINB7O75635 380 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 ANXA8P13928 327 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 FSHRP23945 695 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TGFBR2P37173 567 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 CRYBA2P53672 197 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 SELENOWP63302 87 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 FCHO2Q0JRZ9 810 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 GAB1Q13480 694 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TBCEQ15813 527 aaPredicted RBP13.76□□□□□ -0.21
CD48-201ENST00000368045 MED27Q6P2C8 311 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 SLCO4C1Q6ZQN7 724 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 Q6ZVL8 140 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 DPPA4Q7L190 304 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 FAM124AQ86V42 546 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TMEM25Q86YD3 366 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 P3H2Q8IVL5 708 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 OR4A15Q8NGL6 344 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 HUS1BQ8NHY5 278 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 HCAR2Q8TDS4 363 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 WDR34Q96EX3 536 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 MED8Q96G25 268 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 NEURL2Q9BR09 285 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 RIOK2Q9BVS4 552 aaKnown RBP13.76□□□□□ -0.21
CD48-201ENST00000368045 CREBZFQ9NS37 354 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 PSORS1C1Q9UIG5 152 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 KCNE2Q9Y6J6 123 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 SCN5AQ14524 2016 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 KRT87PA6NCN2 255 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 OR2AG2A6NM03 316 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TNFRSF11BO00300 401 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TSPAN6O43657 245 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 PCDH7O60245 1069 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 TIMP2P16035 220 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 CD36P16671 472 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 ITGA2P17301 1181 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 DDX6P26196 483 aaKnown RBP eCLIP13.76□□□□□ -0.21
CD48-201ENST00000368045 IMPA1P29218 277 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 EPHA2P29317 976 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 RRM2P31350 389 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 VBP1P61758 197 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 CBX3Q13185 183 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 INAQ16352 499 aa13.76□□□□□ -0.21
CD48-201ENST00000368045 SMN1Q16637 294 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms