RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 OR9Q2Q8NGE9 314 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 GPR151Q8TDV0 419 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 NEDD4LQ96PU5 975 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 FYTTD1Q96QD9 318 aaKnown RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 ALOXE3Q9BYJ1 711 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 HOXD1Q9GZZ0 328 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 MAT2BQ9NZL9 334 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TRPM5Q9NZQ8 1165 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CD84Q9UIB8 345 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PPP2R3BQ9Y5P8 575 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SLC35F4A4IF30 521 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 NFKBIEO00221 500 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 ARNTLO00327 626 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SOCS7O14512 581 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PRRG1O14668 218 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 PCDHGA12O60330 932 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TBL1XO60907 577 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 TACR1P25103 407 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 UQCRC1P31930 480 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 GKP32189 559 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CCL23P55773 120 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 DPY19L1Q2PZI1 675 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SYT6Q5T7P8 510 aaPredicted RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 TNFAIP8L2Q6P589 184 aaPredicted RBP10.7□□□□□ -0.7
CLN3-244ENST00000636147 TRIM40Q6P9F5 258 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CERS6Q6ZMG9 384 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 NLGN4XQ8N0W4 816 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 ELMOD1Q8N336 334 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CD200R1Q8TD46 325 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CSGALNACT1Q8TDX6 532 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CCM2Q9BSQ5 444 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 CD244Q9BZW8 370 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 BRINP2Q9C0B6 783 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 MED28Q9H204 178 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 ARNT2Q9HBZ2 717 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 NLKQ9UBE8 527 aa10.7□□□□□ -0.7
CLN3-244ENST00000636147 SNTNA6NMZ2 147 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 E2F3O00716 465 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 GPR32O75388 356 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 CKMP06732 381 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 HOXB6P17509 224 aaKnown RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 PRPS1L1P21108 318 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PTGS2P35354 604 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 SRSF11Q05519 484 aaKnown RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 PPIGQ13427 754 aaKnown RBP eCLIP10.69□□□□□ -0.76e-7■■□□□ 11.8
CLN3-244ENST00000636147 ANKS3Q6ZW76 656 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 USP45Q70EL2 814 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 TCEANCQ8N8B7 351 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 MYO19Q96H55 970 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 BEX1Q9HBH7 125 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 DNMT3LQ9UJW3 386 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 ADAM30Q9UKF2 790 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 GJD2Q9UKL4 321 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 DHRS7Q9Y394 339 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 OR2AG2A6NM03 316 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 WNT9AO14904 365 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PRAMEF11O60813 436 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PTHP01270 115 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 HTR1AP08908 422 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 SLC10A3P09131 477 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 RGS6P49758 472 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PGFP49763 221 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 C2orf80Q0P641 193 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 EXOC3L2Q2M3D2 409 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 MARCH8Q5T0T0 291 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 GCNT6Q5T4J0 391 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 C22orf42Q6IC83 251 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PAMR1Q6UXH9 720 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 SCD5Q86SK9 330 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 GPR149Q86SP6 731 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 NOXA1Q86UR1 476 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 RIMKLAQ8IXN7 391 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 CYP4Z2PQ8N1L4 340 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 SLC37A3Q8NCC5 494 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 ARRDC2Q8TBH0 407 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 AP3S1Q92572 193 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 BCL7BQ9BQE9 202 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 NLNQ9BYT8 704 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 TMEM248Q9NWD8 314 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 FLRT1Q9NZU1 646 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 TAF1LQ8IZX4 1826 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 METTL15A6NJ78 407 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 AP3D1O14617 1153 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 MUSKO15146 869 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 CSTF2P33240 577 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLN3-244ENST00000636147 FRG2Q64ET8 278 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 TMPRSS11BQ86T26 416 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 MFSD4AQ8N468 514 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 C1orf52Q8N6N3 182 aaKnown RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 NFKBIDQ8NI38 313 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PCNPQ8WW12 178 aaKnown RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 POP5Q969H6 163 aaKnown RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 TP53INP1Q96A56 240 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 PPCDCQ96CD2 204 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 C11orf24Q96F05 449 aaPredicted RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 OTUB1Q96FW1 271 aaPredicted RBP10.69□□□□□ -0.7
CLN3-244ENST00000636147 CRELD1Q96HD1 420 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 FRG2BQ96QU4 278 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 FAM129BQ96TA1 746 aa10.69□□□□□ -0.7
CLN3-244ENST00000636147 UCK2Q9BZX2 261 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms