RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RPLP0P05388 317 aaKnown RBP10.32□□□□□ -0.76
TDP1-211ENST00000555178 CASP2P42575 452 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 PCDH1Q08174 1060 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 KCNAB1Q14722 419 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 TBCCQ15814 346 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 SPRED3Q2MJR0 410 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 DEFB110Q30KQ9 67 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 LARP4Q71RC2 724 aaKnown RBP eCLIP10.32□□□□□ -0.76
TDP1-211ENST00000555178 B3GNT8Q7Z7M8 397 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 PIP4P1Q86T03 277 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 OOSP2Q86WS3 158 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.32□□□□□ -0.76
TDP1-211ENST00000555178 ANKS4BQ8N8V4 417 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 RCBTB1Q8NDN9 531 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 DEFB124Q8NES8 71 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 ABHD11Q8NFV4 315 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 HUS1BQ8NHY5 278 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 ERP27Q96DN0 273 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 C1orf50Q9BV19 199 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 AICDAQ9GZX7 198 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 IRF2BPLQ9H1B7 796 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 MYLK2Q9H1R3 596 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 SEMA6CQ9H3T2 930 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 SYNDIG1Q9H7V2 258 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 APOBEC2Q9Y235 224 aaKnown RBP10.32□□□□□ -0.76
TDP1-211ENST00000555178 AKAP13Q12802 2813 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 ASPMQ8IZT6 3477 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 PTPRBP23467 1997 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 CCDC88CQ9P219 2028 aa10.32□□□□□ -0.76
TDP1-211ENST00000555178 KDM1AO60341 852 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 CKMT2P17540 419 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 NCF2P19878 526 aaPredicted RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 HNF4AP41235 474 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 ACADVLP49748 655 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SEPHS1P49903 392 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 CYP4F3Q08477 520 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 IFT88Q13099 833 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SUZ12Q15022 739 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 RBBP5Q15291 538 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 SPDYAQ5MJ70 313 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 ZNF425Q6IV72 752 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 MED27Q6P2C8 311 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 FBXO42Q6P3S6 717 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 ACAD11Q709F0 780 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SLCO6A1Q86UG4 719 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 MARCH9Q86YJ5 346 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 RBM12BQ8IXT5 1001 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 PCBD2Q9H0N5 130 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 STN1Q9H668 368 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 FTSJ1Q9UET6 329 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SNX6Q9UNH7 406 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 KNTC1P50748 2209 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 LOC105369274A0A096LPK9 316 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 LOC102723532A0A0G2JNH3 316 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 C2orf74A8MZ97 194 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 H0YIV9 168 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SAP18O00422 153 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 LSM1O15116 133 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 KRT6AP02538 564 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 KRT6BP04259 564 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 BCL6P41182 706 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 KRT6CP48668 564 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 CCR8P51685 355 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 PDX1P52945 283 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 DIO3P55073 304 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 NME5P56597 212 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 RPS13P62277 151 aaKnown RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 REEP5Q00765 189 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SLC14A1Q13336 389 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 KIR2DS3Q14952 304 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 NR6A1Q15406 480 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 RFTN2Q52LD8 501 aaPredicted RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 FRMPD2BQ6IN97 320 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 FIGLAQ6QHK4 219 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 C6orf89Q6UWU4 347 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 PAQR7Q86WK9 346 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 OR4N4Q8N0Y3 316 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 DTWD1Q8N5C7 304 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 AVL9Q8NBF6 648 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 OR4K1Q8NGD4 311 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 TRAPPC9Q96Q05 1148 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 EFCAB11Q9BUY7 163 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.31□□□□□ -0.76
TDP1-211ENST00000555178 LRRN3Q9H3W5 708 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 EHD1Q9H4M9 534 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 PELI2Q9HAT8 420 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 PRM3Q9NNZ6 103 aa10.31□□□□□ -0.76
TDP1-211ENST00000555178 SPAARA0A1B0GVQ0 90 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 PMS2P1A4D2B8 440 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 C4orf51C9J302 202 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 C9JVG2 144 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 OR1F1O43749 312 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 HYAL3O43820 417 aaPredicted RBP10.3□□□□□ -0.76
TDP1-211ENST00000555178 B3GALT4O96024 378 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 C9P02748 559 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 PRR35P0CG20 571 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 ACP1P24666 158 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 CMPK1P30085 196 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 GPR3P46089 330 aa10.3□□□□□ -0.76
TDP1-211ENST00000555178 EPHA4P54764 986 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms