RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ST7LQ8TDW4 575 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 HPSE2Q8WWQ2 592 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 PIK3R3Q92569 461 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ZNF524Q96C55 264 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 INPP4AQ96PE3 977 aaPredicted RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 PI4K2AQ9BTU6 479 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ACAT2Q9BWD1 397 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 SLC39A8Q9C0K1 460 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 CUEDC2Q9H467 287 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 RAVER2Q9HCJ3 691 aaKnown RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 SDF2L1Q9HCN8 221 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 PPANQ9NQ55 473 aaKnown RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 PDRG1Q9NUG6 133 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 TMOD3Q9NYL9 352 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ZNF624Q9P2J8 865 aaPredicted RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 TRPC4Q9UBN4 977 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 C19orf25Q9UFG5 118 aaPredicted RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 STX8Q9UNK0 236 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 PA2G4Q9UQ80 394 aaKnown RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 PPP2R2CQ9Y2T4 447 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 PCDHGA1Q9Y5H4 931 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 TRAV18A0A075B6X5 111 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 A0A0G2JLW4 131 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 TRBV5-5A0A0J9YX44 114 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 ATP9AO75110 1047 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 EDN1P05305 212 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 CD48P09326 243 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 ATP6V1E1P36543 226 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 AKAP17AQ02040 695 aaKnown RBP3.68□□□□□ -1.82
VPS29-205ENST00000548539 SP3Q02447 781 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 ABRQ12979 859 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 LASP1Q14847 261 aaKnown RBP3.68□□□□□ -1.82
VPS29-205ENST00000548539 IFI44LQ53G44 452 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 PRAMEF8Q5VWM4 474 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 PM20D1Q6GTS8 502 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 G2E3Q7L622 706 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 ARL10Q8N8L6 244 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 AMER3Q8N944 861 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 SMYD1Q8NB12 490 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 OR2T11Q8NH01 316 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 SNX21Q969T3 373 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 BTBD9Q96Q07 612 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 PANX3Q96QZ0 392 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 ALKBH7Q9BT30 221 aaPredicted RBP3.68□□□□□ -1.82
VPS29-205ENST00000548539 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 OSBPL8Q9BZF1 889 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 THAP2Q9H0W7 228 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 DBNDD1Q9H9R9 158 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 MID1IP1Q9NPA3 183 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 OR6C2Q9NZP2 312 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 ITM2BQ9Y287 266 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 COLEC10Q9Y6Z7 277 aa3.68□□□□□ -1.82
VPS29-205ENST00000548539 GREB1LQ9C091 1923 aaPredicted RBP3.68□□□□□ -1.82
VPS29-205ENST00000548539 C13orf42A0A1B0GVH6 325 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 PMS2P5A8MQ11 134 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 DDX39AO00148 427 aaKnown RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 O00370 1275 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 EXTL3O43909 919 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 ACSL4O60488 711 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 KERAO60938 352 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 GLRA3O75311 464 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 CDC123O75794 336 aaPredicted RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 AKAP3O75969 853 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 FAM157CP0CG43 387 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 ERVK-10P10266 1014 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 GP1BBP13224 206 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 MAGEA11P43364 429 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 HERV-K104P61576 105 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 KCNJ10P78508 379 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 RPA4Q13156 261 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 C2orf76Q3KRA6 126 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 XKR6Q5GH73 641 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 FFAR4Q5NUL3 377 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 ZNF770Q6IQ21 691 aaPredicted RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 SIGLEC15Q6ZMC9 328 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 SLC24A5Q71RS6 500 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 C5orf24Q7Z6I8 188 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 RCOR2Q8IZ40 523 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 TDHQ8IZJ6 230 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 GBP7Q8N8V2 638 aaPredicted RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 TMEM178AQ8NBL3 297 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 SLC37A3Q8NCC5 494 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 LPCAT1Q8NF37 534 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 GPRC5AQ8NFJ5 357 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 CKAP2Q8WWK9 683 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 SUSD6Q92537 303 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 RFT1Q96AA3 541 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 SNRNP40Q96DI7 357 aaKnown RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 CDKN2AIPNLQ96HQ2 116 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 NECTIN4Q96NY8 510 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 TSSK2Q96PF2 358 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 UHRF2Q96PU4 802 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 IDI2Q9BXS1 227 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 MTMR12Q9C0I1 747 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 RNPEPL1Q9HAU8 725 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 INTS10Q9NVR2 710 aaKnown RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 AKAP7Q9P0M2 348 aaPredicted RBP3.67□□□□□ -1.82
VPS29-205ENST00000548539 FBXW2Q9UKT8 454 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 GRID1Q9ULK0 1009 aa3.67□□□□□ -1.82
VPS29-205ENST00000548539 NCKAP1Q9Y2A7 1128 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms