RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FZD4Q9ULV1 537 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 OR1I1O60431 355 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 TNFRSF1BP20333 461 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 OR3A3P47888 321 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 CCL23P55773 120 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 PUDPQ08623 228 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 STX4Q12846 297 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 POU4F3Q15319 338 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 LINGO4Q6UY18 593 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 GET4Q7L5D6 327 aaPredicted RBP13.81□□□□□ -0.2
LIMS1-215ENST00000544547 YIPF7Q8N8F6 280 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 SPERTQ8NA61 448 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 FBXO10Q9UK96 956 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 AGO1Q9UL18 857 aaKnown RBP13.81□□□□□ -0.2
LIMS1-215ENST00000544547 ANGPT4Q9Y264 503 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 LCHNA4D1U4 455 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 TBC1D3BA6NDS4 549 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 MID1O15344 667 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 SCO1O75880 301 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 IFNW1P05000 195 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 CLTBP09497 229 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 MAP2K5Q13163 448 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 MAD2L1BPQ15013 274 aaPredicted RBP13.81□□□□□ -0.2
LIMS1-215ENST00000544547 RUNDC3AQ59EK9 446 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 KANK2Q63ZY3 851 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 RNF121Q9H920 327 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 MLXQ9UH92 298 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 PTCH2Q9Y6C5 1203 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 NUP205Q92621 2012 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 SPNP16150 400 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 AP2S1P53680 142 aaPredicted RBP13.81□□□□□ -0.2
LIMS1-215ENST00000544547 TRIM40Q6P9F5 258 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 UBE2R2Q712K3 238 aaPredicted RBP13.81□□□□□ -0.2
LIMS1-215ENST00000544547 HJURPQ8NCD3 748 aaPredicted RBP13.81□□□□□ -0.2
LIMS1-215ENST00000544547 TOR1AIP2Q8NFQ8 470 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 SPG21Q9NZD8 308 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 ABCG2Q9UNQ0 655 aa13.81□□□□□ -0.2
LIMS1-215ENST00000544547 SMLR1H3BR10 107 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 JRKO75564 520 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 EVI2BP34910 448 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 NFKB2Q00653 900 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 HKDC1Q2TB90 917 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ATP13A5Q4VNC0 1218 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ZSWIM9Q86XI8 627 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 AQP11Q8NBQ7 271 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 OR10T2Q8NGX3 314 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 KLHL6Q8WZ60 621 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 SUSD6Q92537 303 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 VMP1Q96GC9 406 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 BBS4Q96RK4 519 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 SMOQ99835 787 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 BCL7BQ9BQE9 202 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 RHNO1Q9BSD3 238 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 CCDC32Q9BV29 185 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ZDHHC6Q9H6R6 413 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 AKIP1Q9NQ31 210 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 RREB1Q92766 1687 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 A0A1W2PQL4 384 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 HMX3A6NHT5 357 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ANXA4P09525 319 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 OGNP20774 298 aaKnown RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 KDELR2P33947 212 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 LIPAP38571 399 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 STARP49675 285 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 STC1P52823 247 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ABRQ12979 859 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 COQ5Q5HYK3 327 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 FAM92BQ6ZTR7 304 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 DPP10Q8N608 796 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 GALNT11Q8NCW6 608 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 TMED9Q9BVK6 235 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 NLNQ9BYT8 704 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 HCAR3P49019 387 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 CRYBB1P53674 252 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 SMAD3P84022 425 aaKnown RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 GPRIN1Q7Z2K8 1008 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 PROKR1Q8TCW9 393 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ASB15Q8WXK1 588 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 UHRF1Q96T88 793 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 FNDC11Q9BVV2 318 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 POLR2J3Q9H1A7 115 aaKnown RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 RPS6KB2Q9UBS0 482 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 DNMT3LQ9UJW3 386 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 DLEC1Q9Y238 1755 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 SEPT4O43236 478 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 HOXC11O43248 304 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 TBX18O95935 607 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 PLATP00750 562 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 CYP2A6P11509 494 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 TGM1P22735 817 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 HRH2P25021 359 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 SCNN1AP37088 669 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 TARDBPQ13148 414 aaKnown RBP eCLIP13.8□□□□□ -0.21e-6■■■□□ 19
LIMS1-215ENST00000544547 CHIT1Q13231 466 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 KCNA10Q16322 511 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 DCST1Q5T197 706 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 ANKRD54Q6NXT1 300 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 RBM23Q86U06 439 aaKnown RBP13.8□□□□□ -0.2
LIMS1-215ENST00000544547 DENND1CQ8IV53 801 aa13.8□□□□□ -0.2
LIMS1-215ENST00000544547 RGL4Q8IZJ4 473 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms