RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 UBQLN3Q9H347 655 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 CENPHQ9H3R5 247 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 AUNIPQ9H7T9 357 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 FN3KRPQ9HA64 309 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 C8orf4Q9NR00 106 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 TUBG2Q9NRH3 451 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 HAO2Q9NYQ3 351 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 DBNLQ9UJU6 430 aaKnown RBP4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 STAP1Q9ULZ2 295 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 NFU1Q9UMS0 254 aa4.64□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC38A8A6NNN8 435 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 C12orf71A8MTZ7 269 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TCP11X1B4DZS4 312 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PDLIM1O00151 329 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TLR4O00206 839 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CTIFO43310 598 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 DCXO43602 365 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 KLK8O60259 260 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 UGDHO60701 494 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SNNO75324 88 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 WBP4O75554 376 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SERPINI2O75830 405 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 KDM4BO94953 1096 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 WDR47O94967 919 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 MBPP02686 304 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PGK2P07205 417 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 STAG3L2P0CL84 134 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 IDO1P14902 403 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 EZRP15311 586 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CFL1P23528 166 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 IL32P24001 234 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PON1P27169 355 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 LCN1P31025 176 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 RYKP34925 604 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SERPINB6P35237 376 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CEBPDP49716 269 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC26A2P50443 739 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SERPINH1P50454 418 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 THOP1P52888 689 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PDK3Q15120 406 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 ANGPT1Q15389 498 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SYT16Q17RD7 645 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TBRG1Q3YBR2 411 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM41BQ5BJD5 291 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 FAM76BQ5HYJ3 339 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 C9orf50Q5SZB4 431 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF658Q5TYW1 1059 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 LRRC66Q68CR7 880 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SPECC1LQ69YQ0 1117 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SCYL2Q6P3W7 929 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TTC27Q6P3X3 843 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC27A1Q6PCB7 646 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TRILQ7L0X0 811 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TRMT11Q7Z4G4 463 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PHLDB2Q86SQ0 1253 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 YRDCQ86U90 279 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 ST13P4Q8IZP2 240 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 GHDCQ8N2G8 530 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 GUF1Q8N442 669 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PLD5Q8N7P1 536 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PTGR2Q8N8N7 351 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CLEC1AQ8NC01 280 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 MCUQ8NE86 351 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM185AQ8NFB2 350 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TSPAN14Q8NG11 270 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 OR52B4Q8NGK2 314 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC2A12Q8TD20 617 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC2A14Q8TDB8 520 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TANKQ92844 425 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 RNFT2Q96EX2 444 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 TMA16Q96EY4 203 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 OXNAD1Q96HP4 312 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 MED30Q96HR3 178 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 KLHL15Q96M94 604 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SIN3AQ96ST3 1273 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CITED1Q99966 193 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CCM2Q9BSQ5 444 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 EGLN1Q9GZT9 426 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 DNTTIP1Q9H147 329 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 OR52A5Q9H2C5 316 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 BLZF1Q9H2G9 400 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 ASNSD1Q9NWL6 643 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 EURLQ9NYK6 297 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 MSRB1Q9NZV6 116 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 ERVK-18Q9QC07 812 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC7A8Q9UHI5 535 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 RSPH14Q9UHP6 348 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC24A2Q9UI40 661 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 CD207Q9UJ71 328 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 RNF24Q9Y225 148 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 NCKAP1Q9Y2A7 1128 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 PADI2Q9Y2J8 665 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 MAD1L1Q9Y6D9 718 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 KIAA1217Q5T5P2 1943 aa4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF644Q9H582 1327 aaPredicted RBP4.63□□□□□ -1.67
CCDC88A-210ENST00000468534 C13orf42A0A1B0GVH6 325 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 C17orf102A2RUQ5 167 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 GOLGA8JA6NMD2 632 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 BECN2A8MW95 431 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 GOLGA8TH3BQL2 631 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms