RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 TMEM203Q969S6 136 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 SLCO3A1Q9UIG8 710 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 SULT1C4O75897 302 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 GSTT2P0CG29 244 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 GSTT2BP0CG30 244 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 CKMT1AP12532 417 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 RYKP34925 604 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 MVKQ03426 396 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 ANXA8L1Q5VT79 327 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 ZZZ3Q8IYH5 903 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 DCAF4L2Q8NA75 395 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 CCDC115Q96NT0 180 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 SLC35A5Q9BS91 424 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 ABCB9Q9NP78 766 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 MS4A12Q9NXJ0 267 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 PPT2Q9UMR5 302 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 GRXCR2A6NFK2 248 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 GADD45GO95257 159 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 C6orf47O95873 294 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 RPS13P62277 151 aaKnown RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 POLR2LP62875 67 aaKnown RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 SLC14A1Q13336 389 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 COL9A2Q14055 689 aaPredicted RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 DOC2AQ14183 400 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 CXorf57Q6NSI4 855 aaKnown RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 CRTC1Q6UUV9 634 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 TPRG1Q6ZUI0 275 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 USP43Q70EL4 1123 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 TSPYL5Q86VY4 417 aaPredicted RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 TRIM69Q86WT6 500 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 FAM217AQ8IXS0 508 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 Q8N9G6 341 aaPredicted RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 SCAIQ8N9R8 606 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 OR9Q2Q8NGE9 314 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 DOK1Q99704 481 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 P2RY13Q9BPV8 354 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 WRAP53Q9BUR4 548 aaKnown RBP11.48□□□□□ -0.57
MSH6-204ENST00000445503 C1QTNF3Q9BXJ4 246 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 P2RY12Q9H244 342 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 RNF167Q9H6Y7 350 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 ERVK13-1Q9NX77 482 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 TAS2R16Q9NYV7 291 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 SPG21Q9NZD8 308 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 POU2F3Q9UKI9 436 aa11.48□□□□□ -0.57
MSH6-204ENST00000445503 MYL12BO14950 172 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 AQP9O43315 295 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 HTR1AP08908 422 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 CTSOP43234 321 aaPredicted RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 ZFP36L2P47974 494 aaKnown RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 PPP5CP53041 499 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 KRR1Q13601 381 aaKnown RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 KRT33BQ14525 404 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 DPY19L1Q2PZI1 675 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 GTF2IRD2BQ6EKJ0 949 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 TRIM40Q6P9F5 258 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 GET4Q7L5D6 327 aaPredicted RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 TMCO2Q7Z6W1 182 aaPredicted RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 GTF2IRD2Q86UP8 949 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 BBS7Q8IWZ6 715 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 CFAP206Q8IYR0 622 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 DNASE1L2Q92874 299 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 DEPDC7Q96QD5 511 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 WBP11Q9Y2W2 641 aaKnown RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 CEP350Q5VT06 3117 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 HTR3EA5X5Y0 456 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 TLL1O43897 1013 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 LZTS3O60299 673 aaPredicted RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 C1QCP02747 245 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 ATP1B2P14415 290 aaPredicted RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 CD40LGP29965 261 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 CD70P32970 193 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 HOXD12P35452 270 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 LMAN2Q12907 356 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 SCARB2Q14108 478 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 EXOC3L2Q2M3D2 409 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 TIMM50Q3ZCQ8 353 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 DGKKQ5KSL6 1271 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 AGTRAPQ6RW13 159 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 NLGN4XQ8N0W4 816 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 STARD8Q92502 1023 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 EID2BQ96D98 161 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 NTMT1Q9BV86 223 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 E7EQ34 232 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 CA5AP35218 305 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 C1DQ13901 141 aaKnown RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 CTF1Q16619 201 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 PDZK1Q5T2W1 519 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 HMGN2P46Q86SG4 172 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 VRK3Q8IV63 474 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 NPAS3Q8IXF0 933 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 ATL1Q8WXF7 558 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 CNDP2Q96KP4 475 aaKnown RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 RIOK2Q9BVS4 552 aaKnown RBP11.47□□□□□ -0.57
MSH6-204ENST00000445503 NLNQ9BYT8 704 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 EHD1Q9H4M9 534 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 TRIM39Q9HCM9 518 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 DYRK4Q9NR20 520 aa11.47□□□□□ -0.57
MSH6-204ENST00000445503 A0A1W2PRU2 124 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 SAGE2PA6NJ88 616 aa11.46□□□□□ -0.57
MSH6-204ENST00000445503 ANKRD28O15084 1053 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms