RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CAPN13Q6MZZ7 669 aaPredicted RBP20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 SYTL1Q8IYJ3 562 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 SPARTQ8N0X7 666 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 SYNPOQ8N3V7 929 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 ARRDC3Q96B67 414 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 GABARAPL1Q9H0R8 117 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 SH2B3Q9UQQ2 575 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 ORC6Q9Y5N6 252 aa20.08■□□□□ 0.8
CCDC88B-203ENST00000359902 C1orf226A1L170 272 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 ADH1CP00326 375 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 HTR1AP08908 422 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 AGXTP21549 392 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 VIPR2P41587 438 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 SLC6A11P48066 632 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 VLDLRP98155 873 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 DCTN2Q13561 401 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 GTF2H3Q13889 308 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 LAPTM4AQ15012 233 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 C9orf64Q5T6V5 341 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 CBLL1Q75N03 491 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 EIF3MQ7L2H7 374 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 CPA6Q8N4T0 437 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 CHST8Q9H2A9 424 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 PRM3Q9NNZ6 103 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 EXO1Q9UQ84 846 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 MGAT4DA6NG13 374 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 hCG_2039718K7EN88 272 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 ITGB7P26010 798 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 GSTM2P28161 218 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 TIA1P31483 386 aaKnown RBP eCLIP20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 RYKP34925 604 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 EMP3P54852 163 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 VEZF1Q14119 521 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 TRAPPC5Q8IUR0 188 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 ETFBKMTQ8IXQ9 262 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 LMNTD1Q8N9Z9 388 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 VPS37AQ8NEZ2 397 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 FZD4Q9ULV1 537 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 MAPRE3Q9UPY8 281 aa20.07■□□□□ 0.8
CCDC88B-203ENST00000359902 KIAA0100Q14667 2235 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 LRRK1Q38SD2 2015 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 GNG14A0A1W2PPG7 69 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 PLK4O00444 970 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 DIRAS1O95057 198 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 FABP3P05413 133 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 NUDT7P0C024 238 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 ITGAMP11215 1152 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 IGFBP5P24593 272 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 HPCAL1P37235 193 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 STT3AP46977 705 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 DAPP51397 102 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 GABARAPL2P60520 117 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 PPIGQ13427 754 aaKnown RBP eCLIP20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 IL18R1Q13478 541 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 ANXA8L1Q5VT79 327 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 GALNT18Q6P9A2 607 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 ARHGAP22Q7Z5H3 698 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 GALNT5Q7Z7M9 940 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 PIK3C3Q8NEB9 887 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 TMIEQ8NEW7 156 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 SNX19Q92543 992 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 NUS1Q96E22 293 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 WDR34Q96EX3 536 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 HSH2DQ96JZ2 352 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 SGPP1Q9BX95 441 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 TMEM9Q9P0T7 183 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 GMEB1Q9Y692 573 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 CHD7Q9P2D1 2997 aa20.06■□□□□ 0.8
CCDC88B-203ENST00000359902 PNLIPRP1P54315 467 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 TOP3AQ13472 1001 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 TMEM240Q5SV17 173 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 NPAS3Q8IXF0 933 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 ZFP90Q8TF47 636 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 FBLIM1Q8WUP2 373 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 BADQ92934 168 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 REPS1Q96D71 796 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 ZCCHC2Q9C0B9 1178 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 LHPPQ9H008 270 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 EXD2Q9NVH0 621 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 SH3BP4Q9P0V3 963 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 A0A1W2PPW3 197 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 MYO1GB0I1T2 1018 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 BCKDKO14874 412 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 PCDH7O60245 1069 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 MMP20O60882 483 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 C6P13671 934 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 DNAJA1P31689 397 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 GPR1P46091 355 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 UBE3AQ05086 875 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 GAB1Q13480 694 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 TSTA3Q13630 321 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 TUBA3CQ13748 450 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 HNRNPA1L2Q32P51 320 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 FNDC3BQ53EP0 1204 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 FGD3Q5JSP0 725 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 RAET1GQ6H3X3 334 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 ZNF765Q7L2R6 523 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 ZNF547Q8IVP9 402 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 OR9A1PQ8NGU1 263 aa20.05■□□□□ 0.8
CCDC88B-203ENST00000359902 SPATA9Q9BWV2 254 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms