RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CD36P16671 472 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 PPIBP23284 216 aaKnown RBP18.08■□□□□ 0.48
CPSF3-201ENST00000238112 CSNK2BP67870 215 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 HIST2H2ACQ16777 129 aaPredicted RBP18.08■□□□□ 0.48
CPSF3-201ENST00000238112 MFSD4AQ8N468 514 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 LGALS12Q96DT0 336 aa18.08■□□□□ 0.48
CPSF3-201ENST00000238112 OR2A25A4D2G3 310 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 DPM1O60762 260 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 WBP4O75554 376 aaKnown RBP18.07■□□□□ 0.48
CPSF3-201ENST00000238112 GSTM1P09488 218 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 AQP1P29972 269 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 HLA-FP30511 346 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ASMTP46597 345 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 SNX29P2Q8IUI4 249 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ENTHD1Q8IYW4 607 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 C7orf34Q96L11 122 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 HERC2P3Q9BVR0 1158 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 SGK2Q9HBY8 427 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 BTNL2Q9UIR0 455 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 BTBD3Q9Y2F9 522 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 PCDHGB3Q9Y5G1 929 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 PMF1-BGLAPU3KQ54 211 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 LCKP06239 509 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ANXA4P09525 319 aaPredicted RBP18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ALOX5P09917 674 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 HSD3B1P14060 373 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 HSD3B2P26439 372 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 RRM2P31350 389 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 HNF4AP41235 474 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 POLR2LP62875 67 aaKnown RBP18.07■□□□□ 0.48
CPSF3-201ENST00000238112 KCNJ10P78508 379 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 HKDC1Q2TB90 917 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ANXA8L1Q5VT79 327 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 GRHL2Q6ISB3 625 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 GPR153Q6NV75 609 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 GAREM2Q75VX8 874 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 PXYLP1Q8TE99 480 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ATL1Q8WXF7 558 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 RPL3LQ92901 407 aaKnown RBP18.07■□□□□ 0.48
CPSF3-201ENST00000238112 SCAMP4Q969E2 229 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ITPKCQ96DU7 683 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ZHX1-C8orf76Q96EF9 292 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ZNF558Q96NG5 402 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 ALOXE3Q9BYJ1 711 aa18.07■□□□□ 0.48
CPSF3-201ENST00000238112 OR2AG2A6NM03 316 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 CLDN24A6NM45 220 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 GABRR3A8MPY1 467 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 ARHGEF33A8MVX0 844 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 EFCAB9A8MZ26 197 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 GRM6O15303 877 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 SH3BGRLO75368 114 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 NTRK1P04629 796 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 RXRGP48443 463 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 SLC7A9P82251 487 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 FADDQ13158 208 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 NAE1Q13564 534 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 RGNQ15493 299 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 SYTL3Q4VX76 610 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 NPAS3Q8IXF0 933 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 C1orf52Q8N6N3 182 aaKnown RBP18.06■□□□□ 0.48
CPSF3-201ENST00000238112 APH1BQ8WW43 257 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 FCGR1BQ92637 280 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 MAL2Q969L2 176 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 METTL2AQ96IZ6 378 aaKnown RBP18.06■□□□□ 0.48
CPSF3-201ENST00000238112 HRASLS5Q96KN8 279 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 ITPAQ9BY32 194 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 GABARAPL3Q9BY60 117 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 CEP44Q9C0F1 390 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 FAM83DQ9H4H8 585 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 BRF2Q9HAW0 419 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 VPS4AQ9UN37 437 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 MAPRE3Q9UPY8 281 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 PCDHGA6Q9Y5G7 932 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 MICAL3Q7RTP6 2002 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 CXorf51AA0A1B0GTR3 108 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 MGAT4DA6NG13 374 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 H0YIV9 168 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 ADAM23O75077 832 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 AP2A2O94973 939 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 GSSP48637 474 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 CLK1P49759 484 aaKnown RBP18.06■□□□□ 0.48
CPSF3-201ENST00000238112 IQCCQ4KMZ1 466 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 UBE2UQ5VVX9 321 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 AGTRAPQ6RW13 159 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 SLC39A11Q8N1S5 342 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 SPPL2AQ8TCT8 520 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 DNASE1L2Q92874 299 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 KCNC2Q96PR1 638 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 COPS4Q9BT78 406 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 DOHHQ9BU89 302 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 CHST8Q9H2A9 424 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 GIN1Q9NXP7 522 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 PADI2Q9Y2J8 665 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 AP1M2Q9Y6Q5 423 aa18.06■□□□□ 0.48
CPSF3-201ENST00000238112 NUP214P35658 2090 aaPredicted RBP18.05■□□□□ 0.48
CPSF3-201ENST00000238112 TRAV19A0A0A6YYK7 116 aa18.05■□□□□ 0.48
CPSF3-201ENST00000238112 A0A1W2PQ67 120 aa18.05■□□□□ 0.48
CPSF3-201ENST00000238112 C1orf226A1L170 272 aa18.05■□□□□ 0.48
CPSF3-201ENST00000238112 SLCO2B1O94956 709 aa18.05■□□□□ 0.48
CPSF3-201ENST00000238112 PCGF2P35227 344 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms