RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SPATA17Q96L03 361 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 NEDD4LQ96PU5 975 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 MTERF1Q99551 399 aaKnown RBP11.98□□□□□ -0.49
NUP88-201ENST00000225696 RUBCNLQ9H714 662 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 TPT1P8Q9HAU6 139 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 FKBP14Q9NWM8 211 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 NDUFAF4Q9P032 175 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 SPASTQ9UBP0 616 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 LYVE1Q9Y5Y7 322 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 ZNF840PA6NDX5 716 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 SAGE2PA6NJ88 616 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 CCNKO75909 580 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 RPLP0P05388 317 aaKnown RBP11.98□□□□□ -0.49
NUP88-201ENST00000225696 COX7A2P14406 83 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 GABRB1P18505 474 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 ITGALP20701 1170 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 PRKCDQ05655 676 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 HSPA14Q0VDF9 509 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 KCNA10Q16322 511 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 TRIM71Q2Q1W2 868 aaKnown RBP11.98□□□□□ -0.49
NUP88-201ENST00000225696 ADGRF1Q5T601 910 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 TUBA3EQ6PEY2 450 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 MACC1Q6ZN28 852 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 UBE2R2Q712K3 238 aaPredicted RBP11.98□□□□□ -0.49
NUP88-201ENST00000225696 SYT12Q8IV01 421 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 NAGSQ8N159 534 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 AMER2Q8N7J2 671 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 P2RY13Q9BPV8 354 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 RDH14Q9HBH5 336 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 ANKHQ9HCJ1 492 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 MARCH5Q9NX47 278 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 EHD3Q9NZN3 535 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 FZD4Q9ULV1 537 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 BOLA1Q9Y3E2 137 aa11.98□□□□□ -0.49
NUP88-201ENST00000225696 CFAP20Q9Y6A4 193 aaKnown RBP11.98□□□□□ -0.49
NUP88-201ENST00000225696 H3BQ06 376 aaPredicted RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 J3KTA2 159 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 SYN3O14994 580 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 MRPS14O60783 128 aaKnown RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 TRBC1P01850 177 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 S100A1P23297 94 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 TRPC1P48995 793 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 UGT2B15P54855 530 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 PPIGQ13427 754 aaKnown RBP eCLIP11.97□□□□□ -0.492e-6■■■□□ 16.5
NUP88-201ENST00000225696 DDX39BQ13838 428 aaKnown RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 RSBN1Q5VWQ0 802 aaPredicted RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 ZNF852Q6ZMS4 543 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 NANOGNBQ7Z5D8 188 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 GATAD2AQ86YP4 633 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 MMAAQ8IVH4 418 aaKnown RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 APCDD1Q8J025 514 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 NXPE1Q8N323 547 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 OR9Q2Q8NGE9 314 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 SPPL2AQ8TCT8 520 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 UTP15Q8TED0 518 aaKnown RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 FAM193BQ96PV7 902 aaPredicted RBP11.97□□□□□ -0.49
NUP88-201ENST00000225696 EPYCQ99645 322 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 CHST8Q9H2A9 424 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 TBC1D24Q9ULP9 559 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 PCDHGA2Q9Y5H1 932 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 N6AMT1Q9Y5N5 214 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 USP34Q70CQ2 3546 aa11.97□□□□□ -0.49
NUP88-201ENST00000225696 KIAA0513O60268 411 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 TBL1XO60907 577 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 AOC2O75106 756 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 CYP7B1O75881 506 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 ETHE1O95571 254 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 HLA-EP13747 358 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 PTPN2P17706 415 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 S100A5P33763 92 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 CSKP41240 450 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 TGM4P49221 684 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 RACK1P63244 317 aaKnown RBP11.96□□□□□ -0.49
NUP88-201ENST00000225696 ZNF45Q02386 682 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 BCL7AQ4VC05 210 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 INO80DQ53TQ3 878 aaPredicted RBP11.96□□□□□ -0.49
NUP88-201ENST00000225696 ZMAT1Q5H9K5 638 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 COX20Q5RI15 118 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 ZNF648Q5T619 568 aaPredicted RBP11.96□□□□□ -0.49
NUP88-201ENST00000225696 FRG2Q64ET8 278 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 SLC24A5Q71RS6 500 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 CCDC80Q76M96 950 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 CACTIN-AS1Q8N1I8 211 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 C2orf69Q8N8R5 385 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 OR6F1Q8NGZ6 308 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 FOXJ1Q92949 421 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 FRG2BQ96QU4 278 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 CCM2Q9BSQ5 444 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 RRAGCQ9HB90 399 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 NMRK2Q9NPI5 230 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 GPATCH2Q9NW75 528 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 MS4A12Q9NXJ0 267 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 RAPGEFL1Q9UHV5 662 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 OR51B4Q9Y5P0 310 aa11.96□□□□□ -0.49
NUP88-201ENST00000225696 NPIPB15A6NHN6 443 aaPredicted RBP11.96□□□□□ -0.5
NUP88-201ENST00000225696 OR6C75A6NL08 312 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 GABRR3A8MPY1 467 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 TNFRSF11BO00300 401 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 SUV39H1O43463 412 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 ABCB1P08183 1280 aaPredicted RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms