RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZNF12P17014 697 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 CCR2P41597 374 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 BRAT1Q6PJG6 821 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 SLC32A1Q9H598 525 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 B4GALT6Q9UBX8 382 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 TNPO3Q9Y5L0 923 aaKnown RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 SNX11Q9Y5W9 270 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 SCN3AQ9NY46 2000 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 FADS2P1A8MWK0 482 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 TLL1O43897 1013 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 NOL3O60936 208 aaKnown RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 SLC16A8O95907 504 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 NPRL3Q12980 569 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 HSD11B1LQ7Z5J1 315 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 SPRED2Q7Z698 418 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 SNX5Q9Y5X3 404 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 HEATR5BQ9P2D3 2071 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 ZNF106Q9H2Y7 1883 aaKnown RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 OR2A25A4D2G3 310 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 ARHGEF33A8MVX0 844 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 FAM220BPB1ANY3 271 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 M0R3G1 203 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 PQBP1O60828 265 aaKnown RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 FAM20BO75063 409 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 HPRP00739 348 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 S100BP04271 92 aaPredicted RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 HSMCR30P0CW71 290 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 SRCP12931 536 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 DGKAP23743 735 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 CD40LGP29965 261 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 PBLDP30039 288 aaPredicted RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 TTKP33981 857 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 KIR3DL1P43629 444 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 HBA1P69905 142 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 KCNJ8Q15842 424 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 HIST2H2ACQ16777 129 aaPredicted RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 NIPAL1Q6NVV3 410 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 COMTD1Q86VU5 262 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 SFTPA1Q8IWL2 248 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 C1orf52Q8N6N3 182 aaKnown RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 ASB11Q8WXH4 323 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 ZBTB18Q99592 522 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 C6orf62Q9GZU0 229 aaPredicted RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 DSN1Q9H410 356 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 KRT84Q9NSB2 600 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 DNMT3AQ9Y6K1 912 aaPredicted RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 GMNNO75496 209 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 CYP7B1O75881 506 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SCELO95171 688 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SLC6A12P48065 614 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 DOC2AQ14183 400 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 PAQR6Q6TCH4 344 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 LEMD2Q8NC56 503 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 TPT1P8Q9HAU6 139 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 NDUFAF4Q9P032 175 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 BOLA1Q9Y3E2 137 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 A0A1W2PRU2 124 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 K7ESM1 405 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 RFPL2O75678 378 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 MSH3P20585 1137 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 RYKP34925 604 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 MACC1Q6ZN28 852 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 TMEM25Q86YD3 366 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 RBM45Q8IUH3 476 aaKnown RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 VANGL1Q8TAA9 524 aaPredicted RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 CYB5D2Q8WUJ1 264 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 GTPBP3Q969Y2 492 aaKnown RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 CDADC1Q9BWV3 514 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 CHST8Q9H2A9 424 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 STARD7Q9NQZ5 370 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 TRPM5Q9NZQ8 1165 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 FZD4Q9ULV1 537 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 MAN2B2Q9Y2E5 1009 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 PRKAB1Q9Y478 270 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 LINC00854A0A1B0GVQ3 168 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 CTDSP2O14595 271 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 APOL3O95236 402 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 STATHP02808 62 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 ITGALP20701 1170 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SDHBP21912 280 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 CD9P21926 228 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SSTR4P31391 388 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 C6orf183Q5T699 404 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SYT6Q5T7P8 510 aaPredicted RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 NXNL2Q5VZ03 156 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 FRG2Q64ET8 278 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 ATG9BQ674R7 924 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SYT12Q8IV01 421 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SHISA5Q8N114 240 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 FRG2BQ96QU4 278 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 YTHDF1Q9BYJ9 559 aaKnown RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 RERGLQ9H628 205 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 PPM1DO15297 605 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 COX7A2P14406 83 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 RPS26P11Q5JNZ5 115 aaPredicted RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 C11orf24Q96F05 449 aaPredicted RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 ABHD8Q96I13 439 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 SDHCQ99643 169 aaPredicted RBP10.31□□□□□ -0.76
USP28-201ENST00000003302 DCSTAMPQ9H295 470 aa10.31□□□□□ -0.76
USP28-201ENST00000003302 ZNF226Q9NYT6 803 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms