RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ITGA3P26006 1051 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 SLC26A3P40879 764 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 MAT1AQ00266 395 aaKnown RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 PDIA2Q13087 525 aaKnown RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 PDAP1Q13442 181 aaKnown RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 ZNF460Q14592 562 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 INPP5JQ15735 1006 aaPredicted RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 PPP1R3AQ16821 1122 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 GARNL3Q5VVW2 1013 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 SBSNQ6UWP8 590 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 IGFL3Q6UXB1 125 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 ZC3H7AQ8IWR0 971 aaKnown RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 AMER2Q8N7J2 671 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 GABPB2Q8TAK5 448 aaPredicted RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 RERGQ96A58 199 aaPredicted RBP12.4□□□□□ -0.42
LIG1-212ENST00000596549 MIEF2Q96C03 454 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 PYCR2Q96C36 320 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 MCMBPQ9BTE3 642 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 DRC3Q9H069 523 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 PARVBQ9HBI1 364 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 ATP13A2Q9NQ11 1180 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 SMYD2Q9NRG4 433 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 TMEM184CQ9NVA4 438 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 C3orf18Q9UK00 162 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 SNX24Q9Y343 169 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 DOPEY2Q9Y3R5 2298 aa12.4□□□□□ -0.42
LIG1-212ENST00000596549 PTPN13Q12923 2485 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 A0A1W2PQ72 361 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 FEZF1A0PJY2 475 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 IDSB3KWA1 339 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 PIAS1O75925 651 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 CDH1P12830 882 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 BCL6P41182 706 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 PAFAH1B1P43034 410 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 OCA2Q04671 838 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 C2orf54Q08AI8 447 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 MGAT5Q09328 741 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 CBLBQ13191 982 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 NAE1Q13564 534 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 PLEKHN1Q494U1 663 aaPredicted RBP12.39□□□□□ -0.43
LIG1-212ENST00000596549 ATG9BQ674R7 924 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 LCTLQ6UWM7 567 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 ZC3HC1Q86WB0 502 aaKnown RBP12.39□□□□□ -0.43
LIG1-212ENST00000596549 ATCAYQ86WG3 371 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 MCOLN3Q8TDD5 553 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 MMABQ96EY8 250 aaPredicted RBP12.39□□□□□ -0.43
LIG1-212ENST00000596549 OR4K3Q96R72 315 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 MACROD1Q9BQ69 325 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 SPNS1Q9H2V7 528 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 SLAMF7Q9NQ25 335 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 C14orf105Q9NVL8 296 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 UTP6Q9NYH9 597 aaKnown RBP12.39□□□□□ -0.43
LIG1-212ENST00000596549 MOCS1Q9NZB8 636 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 ZFATQ9P243 1243 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 TRPC4Q9UBN4 977 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 B3GNT3Q9Y2A9 372 aa12.39□□□□□ -0.43
LIG1-212ENST00000596549 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIG1-212ENST00000596549 NBASA2RRP1 2371 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 SCN2AQ99250 2005 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 COL12A1Q99715 3063 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 KCNE1BA0A087WTH5 132 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 FAM95CA0A1B0GW59 222 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 MAP2K7O14733 419 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 PRPF4O43172 522 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIG1-212ENST00000596549 RAD51CO43502 376 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 LCMT2O60294 686 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 JRKO75564 520 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 IPO13O94829 963 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 HPP00738 406 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 ALPPP05187 535 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 ACPPP15309 386 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 IL1RNP18510 177 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 IL2P60568 153 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 RPS15AP62244 130 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 EEF1A2Q05639 463 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 FAM53BQ14153 422 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 UBAP2LQ14157 1087 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 CRB2Q5IJ48 1285 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 TMEM214Q6NUQ4 689 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 IGFL2Q6UWQ7 119 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 Q6ZS92 163 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 CAPN12Q6ZSI9 719 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 CUZD1Q86UP6 607 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 C17orf64Q86WR6 236 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 PARP9Q8IXQ6 854 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 ZBED8Q8IZ13 594 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 EFCAB3Q8N7B9 438 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 GALNT11Q8NCW6 608 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 SPATA4Q8NEY3 305 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 OR9A4Q8NGU2 314 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 OR56A3Q8NH54 315 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 ZCCHC10Q8TBK6 192 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 ANP32BQ92688 251 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 ALKBH8Q96BT7 664 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 SNRNP40Q96DI7 357 aaKnown RBP12.38□□□□□ -0.43
LIG1-212ENST00000596549 TM4SF19Q96DZ7 209 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 C19orf60Q96EN9 201 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 TGIF2Q9GZN2 237 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 PCBD2Q9H0N5 130 aa12.38□□□□□ -0.43
LIG1-212ENST00000596549 DPH5Q9H2P9 285 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms