RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	CEACAM4	O75871	244 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	URI1	O94763	535 aa	Predicted RBP	12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	GSTA2	P09210	222 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	RNF224	P0DH78	156 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PIM1	P11309	404 aa	Predicted RBP	12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	SAT1	P21673	171 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	CCND1	P24385	295 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	OR1D4	P47884	311 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	SLC7A5	Q01650	507 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	ILF2	Q12905	390 aa	Known RBP	12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	NAE1	Q13564	534 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	SSPN	Q14714	243 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	NKG7	Q16617	165 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	MUM1	Q2TAK8	710 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	HKDC1	Q2TB90	917 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PRMT9	Q6P2P2	845 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	LCTL	Q6UWM7	567 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PPP1R32	Q7Z5V6	425 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	ADCK2	Q7Z695	626 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PLD3	Q8IV08	490 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	CEP97	Q8IW35	865 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	OR56A3	Q8NH54	315 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	ANKRD49	Q8WVL7	239 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	ANKRD7	Q92527	254 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	CDKL2	Q92772	493 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PTER	Q96BW5	349 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	FBXL8	Q96CD0	374 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	CABS1	Q96KC9	395 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PRAP1	Q96NZ9	151 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	CPNE1	Q99829	537 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	LRRC1	Q9BTT6	524 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	POPDC3	Q9HBV1	291 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	MLXIPL	Q9NP71	852 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	ACSS2	Q9NR19	701 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	TMEM184C	Q9NVA4	438 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	NOVA2	Q9UNW9	492 aa	Known RBP	12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	PCDHGA9	Q9Y5G4	932 aa	Known RBP	12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	UNC79	Q9P2D8	2635 aa		12.68	□□□□□ -0.38
SREBF1-223	ENST00000584760	NPEPPSL1	A6NEC2	478 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	VSTM2B	A6NLU5	285 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	CDC7	O00311	574 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	HIST1H2AD	P20671	130 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	HRH2	P25021	359 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	GP5	P40197	560 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	CSNK1G2	P78368	415 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	CAPN13	Q6MZZ7	669 aa	Predicted RBP	12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	C3orf62	Q6ZUJ4	267 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	MED25	Q71SY5	747 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	VN1R4	Q7Z5H5	301 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	CCDC25	Q86WR0	208 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	C17orf64	Q86WR6	236 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	NKAP	Q8N5F7	415 aa	Known RBP	12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	TMEM102	Q8N9M5	508 aa	Predicted RBP	12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	RERG	Q96A58	199 aa	Predicted RBP	12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	PYCR2	Q96C36	320 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	MVB12A	Q96EY5	273 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	HIST1H2AH	Q96KK5	128 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	IP6K3	Q96PC2	410 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	OR4K3	Q96R72	315 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	GPR22	Q99680	433 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	RBBP8	Q99708	897 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	HIST1H2AJ	Q99878	128 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	H2AFJ	Q9BTM1	129 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	ZDHHC18	Q9NUE0	388 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	NXT1	Q9UKK6	140 aa	Known RBP	12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	MAU2	Q9Y6X3	613 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	SCN3A	Q9NY46	2000 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	ICE1	Q9Y2F5	2266 aa		12.67	□□□□□ -0.38
SREBF1-223	ENST00000584760	IGLV3-12	A0A075B6K2	115 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	KCNE1B	A0A087WTH5	132 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	PABPN1L	A6NDY0	278 aa	Known RBP	12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	GUCA1C	O95843	209 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	CDH1	P12830	882 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	NPPB	P16860	134 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	MMP11	P24347	488 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	COL8A1	P27658	744 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	MAGEA4	P43358	317 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	RRAD	P55042	308 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	RPS15A	P62244	130 aa	Known RBP	12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	SNRPN	P63162	240 aa	Known RBP	12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	POU4F1	Q01851	419 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	GUCY2D	Q02846	1103 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	DSG2	Q14126	1118 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	KBTBD12	Q3ZCT8	623 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	NADK2	Q4G0N4	442 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	GARNL3	Q5VVW2	1013 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	ZNF787	Q6DD87	383 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	NOA1	Q8NC60	698 aa	Known RBP	12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	FDCSP	Q8NFU4	85 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	ABHD11	Q8NFV4	315 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	ATL1	Q8WXF7	558 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	ALKBH8	Q96BT7	664 aa	Known RBP	12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	HAUS8	Q9BT25	410 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	SLC25A23	Q9BV35	468 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	TRIM54	Q9BYV2	358 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	CAB39L	Q9H9S4	337 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	GPAM	Q9HCL2	828 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	ZNF304	Q9HCX3	659 aa		12.66	□□□□□ -0.38
SREBF1-223	ENST00000584760	P4HTM	Q9NXG6	502 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms