RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 ACKR4Q9NPB9 350 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 BARHL2Q9NY43 387 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 HOXC10Q9NYD6 342 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 TAAR2Q9P1P5 351 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 TUBE1Q9UJT0 475 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 LRP12Q9Y561 859 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 ATP6V1DQ9Y5K8 247 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 LCTP09848 1927 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 LOXHD1Q8IVV2 1947 aa4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 MYH9P35579 1960 aaKnown RBP4.64□□□□□ -1.67
HMGB3P19-201ENST00000403971 PLXNB2O15031 1838 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 IGLV5-45A0A087WSX0 123 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 EDDM13A0A1B0GTR0 161 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 MEIS2O14770 477 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 MMP1P03956 469 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 H1F0P07305 194 aaKnown RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 U2AF2P26368 475 aaKnown RBP eCLIP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 GNA11P29992 359 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 TERF1P54274 439 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 HMGCS2P54868 508 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 CSE1LP55060 971 aaKnown RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 DLX5P56178 289 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 COG2Q14746 738 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 NR1D2Q14995 579 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 CDC37Q16543 378 aaPredicted RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 QRICH1Q2TAL8 776 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 MOB2Q70IA6 237 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 SMIM29Q86T20 159 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 PAPD5Q8NDF8 572 aaKnown RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 Q8NFD4 153 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 DMBX1Q8NFW5 382 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 EXD1Q8NHP7 514 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 BAG1Q99933 345 aaPredicted RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 FAM129AQ9BZQ8 928 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 ZMYND12Q9H0C1 365 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 ANKZF1Q9H8Y5 726 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 SLC38A10Q9HBR0 1119 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 APOBEC3GQ9HC16 384 aaKnown RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 ZCCHC17Q9NP64 241 aaKnown RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 ZFP57Q9NU63 452 aa4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 DDX25Q9UHL0 483 aaKnown RBP4.63□□□□□ -1.67
HMGB3P19-201ENST00000403971 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 A0A1W2PPI3 338 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 HYKKA2RU49 373 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 VPS37CA5D8V6 355 aaPredicted RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 TMEM221A6NGB7 291 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 A8MXE2 369 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 FLOT1O75955 427 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 CRYAAP02489 173 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 ATP1A1P05023 1023 aaKnown RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 APOA4P06727 396 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 LINGO3P0C6S8 592 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 OR2T7P0C7T2 308 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 MSH3P20585 1137 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 HUNKP57058 714 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 TSPY1Q01534 308 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 MFAP5Q13361 173 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 CAMK2DQ13557 499 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 KIR2DS3Q14952 304 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 KRBOX4Q5JUW0 171 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 RBPMS2Q6ZRY4 209 aaKnown RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 CENPVQ7Z7K6 275 aaPredicted RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 ANKRD23Q86SG2 305 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 XXYLT1Q8NBI6 393 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 SLC4A11Q8NBS3 891 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 MOSPD2Q8NHP6 518 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 RMDN1Q96DB5 314 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 LMF2Q9BU23 707 aaKnown RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 TRAF4Q9BUZ4 470 aaPredicted RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 TRMT61BQ9BVS5 477 aaKnown RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 CPVLQ9H3G5 476 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 RPAP3Q9H6T3 665 aaPredicted RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 NOL11Q9H8H0 719 aaKnown RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 VAT1LQ9HCJ6 419 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 C6orf50Q9HD87 102 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 VPS54Q9P1Q0 977 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 SLC24A2Q9UI40 661 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 OSGIN1Q9UJX0 560 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 AGTPBP1Q9UPW5 1226 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 MRPL11Q9Y3B7 192 aaKnown RBP4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 JRKLQ9Y4A0 524 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 ABCB11O95342 1321 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 ZNF236Q9UL36 1845 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 CASP8AP2Q9UKL3 1982 aa4.62□□□□□ -1.67
HMGB3P19-201ENST00000403971 THSD7BQ9C0I4 1608 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 CCL15-CCL14A0A0B4J2E2 113 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 MED19A0JLT2 244 aaPredicted RBP4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 SMCO2A6NFE2 343 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 IFITM10A6NMD0 228 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 TRIM77I1YAP6 450 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 TSPAN1O60635 241 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 DANCRP0C864 163 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 AZGP1P25311 298 aaKnown RBP4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 EPHA2P29317 976 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 COPB2P35606 906 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 KRT2P35908 639 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 HOXA1P49639 335 aaPredicted RBP4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 RAD23AP54725 363 aa4.61□□□□□ -1.67
HMGB3P19-201ENST00000403971 NAPAP54920 295 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms