RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 NEK5Q6P3R8 708 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 CCDC190Q86UF4 302 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 CCDC177Q9NQR7 707 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-202ENST00000375299 RAD18Q9NS91 495 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 GPR83Q9NYM4 423 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 PCDHGB3Q9Y5G1 929 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 PTHP01270 115 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 STSP08842 583 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 CTGFP29279 349 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 NUDT6P53370 316 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 KCNJ10P78508 379 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 DSC1Q08554 894 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 RNF219Q5W0B1 726 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-202ENST00000375299 FAM124AQ86V42 546 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 SYNPOQ8N3V7 929 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 STX19Q8N4C7 294 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 OR6F1Q8NGZ6 308 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 NOD1Q9Y239 953 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 ZNF451Q9Y4E5 1061 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 N6AMT1Q9Y5N5 214 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 PIKFYVEQ9Y2I7 2098 aa20.46■□□□□ 0.87
UPF3A-202ENST00000375299 PDZK1P1A8MUH7 402 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 NBNO60934 754 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 AMD1P17707 334 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 ITGALP20701 1170 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 ACRV1P26436 265 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 SOX6P35712 828 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 WNT3P56703 355 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 OR2B6P58173 313 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 NFATC2Q13469 925 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 BOP1Q14137 746 aaKnown RBP20.45■□□□□ 0.86
UPF3A-202ENST00000375299 SDHCQ99643 169 aaPredicted RBP20.45■□□□□ 0.86
UPF3A-202ENST00000375299 CRISPLD1Q9H336 500 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 RUBCNLQ9H714 662 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 LHX3Q9UBR4 397 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 SCN8AQ9UQD0 1980 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 AOC2O75106 756 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 ACPPP15309 386 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 PRPS1L1P21108 318 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 PIK3CBP42338 1070 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 HTR3AP46098 478 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 OLR1P78380 273 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 UGT8Q16880 541 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 ATAD3CQ5T2N8 411 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 CST9Q5W186 159 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 VASH1Q7L8A9 365 aaPredicted RBP20.45■□□□□ 0.86
UPF3A-202ENST00000375299 DENND1CQ8IV53 801 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 CCDC32Q9BV29 185 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 WBP11Q9Y2W2 641 aaKnown RBP20.45■□□□□ 0.86
UPF3A-202ENST00000375299 KLK4Q9Y5K2 254 aa20.45■□□□□ 0.86
UPF3A-202ENST00000375299 NPIPB8E9PQR5 432 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 SCN2BO60939 215 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 CPSF4O95639 269 aaKnown RBP20.44■□□□□ 0.86
UPF3A-202ENST00000375299 TEKQ02763 1124 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 SRSF11Q05519 484 aaKnown RBP20.44■□□□□ 0.86
UPF3A-202ENST00000375299 C10orf62Q5T681 223 aaPredicted RBP20.44■□□□□ 0.86
UPF3A-202ENST00000375299 NOXRED1Q6NXP6 359 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 MACC1Q6ZN28 852 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 UBQLNLQ8IYU4 475 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 PAF1Q8N7H5 531 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 CRELD1Q96HD1 420 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 SPATA17Q96L03 361 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 FEVQ99581 238 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 EBPLQ9BY08 206 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 ZNF106Q9H2Y7 1883 aaKnown RBP20.44■□□□□ 0.86
UPF3A-202ENST00000375299 ZNF226Q9NYT6 803 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 DNMT3LQ9UJW3 386 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 VPS4AQ9UN37 437 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 RPIAP49247 311 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 CRYBA2P53672 197 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 FAM189BP81408 668 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 IRF3Q14653 427 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 GLB1LQ6UWU2 654 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 CHST9Q7L1S5 443 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 LRRC70Q7Z2Q7 622 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 ZNF605Q86T29 641 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 CYP4Z2PQ8N1L4 340 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 CSGALNACT1Q8TDX6 532 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 ARL15Q9NXU5 204 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 PADI2Q9Y2J8 665 aa20.44■□□□□ 0.86
UPF3A-202ENST00000375299 TRBV5-4A0A0C4DH59 114 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 A0A1B0GVM2 712 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 MTMR11A4FU01 709 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 TNFRSF11BO00300 401 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 PLK4O00444 970 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 SYN3O14994 580 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 HOXC11O43248 304 aaPredicted RBP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 SUV39H1O43463 412 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 ASGR1P07306 291 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 ATP5C1P36542 298 aaKnown RBP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 SLC15A1P46059 708 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 IDH2P48735 452 aaKnown RBP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 EIF4HQ15056 248 aaKnown RBP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 TOR1AIP1Q5JTV8 583 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 TTC23LQ6PF05 361 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 C16orf59Q7L2K0 433 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 SYT12Q8IV01 421 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 CLECL1Q8IZS7 167 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 UPF1Q92900 1129 aaKnown RBP eCLIP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 MYO19Q96H55 970 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms