RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 LRRC56Q8IYG6 542 aaPredicted RBP12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 DHRSXQ8N5I4 330 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 FAM86B1Q8N7N1 296 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 FAM47BQ8NA70 645 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 VPS37AQ8NEZ2 397 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 TSPAN14Q8NG11 270 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 SETD7Q8WTS6 366 aaKnown RBP12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 CYGBQ8WWM9 190 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 SLC5A11Q8WWX8 675 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 TMBIM1Q969X1 311 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 RAD51AP1Q96B01 352 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 KXD1Q9BQD3 176 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 DUSP26Q9BV47 211 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 PBX4Q9BYU1 374 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 OR52A5Q9H2C5 316 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 NKX2-4Q9H2Z4 354 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 MAGIXQ9H6Y5 334 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 NTN4Q9HB63 628 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 OLAHQ9NV23 265 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 DNAJB9Q9UBS3 223 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 ASF1AQ9Y294 204 aa12.48□□□□□ -0.41
SPTLC1-201ENST00000262554 TRPM6Q9BX84 2022 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 MYOCOSA0A1B0GUC4 107 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 GNG14A0A1W2PPG7 69 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 PIPSLA2A3N6 862 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 ANTXRLA6NF34 631 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 MID1O15344 667 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 PI15O43692 258 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 SH3BGRLO75368 114 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 PRKD3O94806 890 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 TFAP2AP05549 437 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 ENGP17813 658 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 KELP23276 732 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 GDI1P31150 447 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 TIA1P31483 386 aaKnown RBP eCLIP12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CAPGP40121 348 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 WNT3P56703 355 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 PHEXP78562 749 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CDK3Q00526 305 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 SF1Q15637 639 aaKnown RBP12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CST6Q15828 149 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 ITPRIPL2Q3MIP1 535 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CPTPQ5TA50 214 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 NXPE4Q6UWF7 544 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 ZNF621Q6ZSS3 439 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 LAS2Q8IYD9 372 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CHPFQ8IZ52 775 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 GPR156Q8NFN8 814 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 ELSPBP1Q96BH3 223 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 SDCCAG3Q96C92 435 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CHFRQ96EP1 664 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 RSPH9Q9H1X1 276 aaPredicted RBP12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CAAP1Q9H8G2 361 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CARS2Q9HA77 564 aaKnown RBP12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 SH2B3Q9UQQ2 575 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 PRKAB1Q9Y478 270 aa12.47□□□□□ -0.41
SPTLC1-201ENST00000262554 CLIC1O00299 241 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 UPK1AO00322 258 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 PCDH7O60245 1069 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 SCN2BO60939 215 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CPSF4O95639 269 aaKnown RBP12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 ADH1BP00325 375 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 SERPINA1P01009 418 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CST1P01037 141 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 RPN2P04844 631 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 LAMP1P11279 417 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 IL1RNP18510 177 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 WASP42768 502 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 NR1H2P55055 460 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 HKDC1Q2TB90 917 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CNPY1Q3B7I2 92 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 OTUD3Q5T2D3 398 aaPredicted RBP12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 ANXA8L1Q5VT79 327 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 AGBL4Q5VU57 503 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 TMEM214Q6NUQ4 689 aaKnown RBP12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 ANKRD54Q6NXT1 300 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 SYCE2Q6PIF2 218 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 TMEM184AQ6ZMB5 413 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CAMKMTQ7Z624 323 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CACUL1Q86Y37 369 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 DCUN1D3Q8IWE4 304 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 C10orf111Q8N326 155 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 NETO1Q8TDF5 533 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 SNX19Q92543 992 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 UBE2E3Q969T4 207 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 MYADMQ96S97 322 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 GRIP2Q9C0E4 1043 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CLK4Q9HAZ1 481 aaKnown RBP12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 SLC24A3Q9HC58 644 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 BTNL2Q9UIR0 455 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 MSRAQ9UJ68 235 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 DNMT3AQ9Y6K1 912 aaPredicted RBP12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 CKAP5Q14008 2032 aa12.46□□□□□ -0.41
SPTLC1-201ENST00000262554 EPOPA6NHQ4 379 aa12.46□□□□□ -0.42
SPTLC1-201ENST00000262554 GABRR3A8MPY1 467 aa12.46□□□□□ -0.42
SPTLC1-201ENST00000262554 GNGT2O14610 69 aa12.46□□□□□ -0.42
SPTLC1-201ENST00000262554 CCNDBP1O95273 360 aa12.46□□□□□ -0.42
SPTLC1-201ENST00000262554 GNAO1P09471 354 aa12.46□□□□□ -0.42
SPTLC1-201ENST00000262554 GPX2P18283 190 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms