RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 POU1F1P28069 291 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 HNRNPH1P31943 449 aaKnown RBP9.54□□□□□ -0.88
LIG3-216ENST00000593099 NUP62P37198 522 aaPredicted RBP9.54□□□□□ -0.88
LIG3-216ENST00000593099 VSX2P58304 361 aaPredicted RBP9.54□□□□□ -0.88
LIG3-216ENST00000593099 CTBSQ01459 385 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 NR0B2Q15466 257 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 PIANPQ8IYJ0 282 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 C1orf52Q8N6N3 182 aaKnown RBP9.54□□□□□ -0.88
LIG3-216ENST00000593099 NATD1Q8N6N6 113 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 GALNT6Q8NCL4 622 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 MIEF2Q96C03 454 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 CCDC134Q9H6E4 229 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 ERVK-11Q9UQG0 969 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 ENTPD2Q9Y5L3 495 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 FOCADQ5VW36 1801 aa9.54□□□□□ -0.88
LIG3-216ENST00000593099 TMX2-CTNND1H3BSU7 103 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 UMPSP11172 480 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 FASP25445 335 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 MPIP34949 423 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 PTGS2P35354 604 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 CDKN1CP49918 316 aaPredicted RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 PGDP52209 483 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 SLC16A1P53985 500 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 KLF10Q13118 480 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 UBAP2LQ14157 1087 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 SPRED2Q7Z698 418 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 GALNT4Q8N4A0 578 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIG3-216ENST00000593099 ADAMTS19Q8TE59 1207 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 DLG3Q92796 817 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 RCN3Q96D15 328 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 CAMK1GQ96NX5 476 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 SMIM14Q96QK8 99 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 RPP25Q9BUL9 199 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 SPAG4Q9NPE6 437 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 PRDM8Q9NQV8 689 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 MANBAO00462 879 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 DFNA5O60443 496 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ERN1O75460 977 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 GJB3O75712 270 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ZMPSTE24O75844 475 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 STATHP02808 62 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 OPRD1P41143 372 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 SCTRP47872 440 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 PSMD4P55036 377 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 WLSQ5T9L3 541 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 SMRP1Q8NCR6 262 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 CYGBQ8WWM9 190 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 HS3ST3A1Q9Y663 406 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 HTRA2O43464 458 aaPredicted RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 PRMT3O60678 531 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 OR2B3O76000 313 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 AK4P27144 223 aaPredicted RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 GRIA3P42263 894 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 RAD23AP54725 363 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 CDKN2DP55273 166 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 TBPL1P62380 186 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ERVK-8P63133 956 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 FCHO2Q0JRZ9 810 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 HSPB3Q12988 150 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 WSCD2Q2TBF2 565 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 LEXMQ3ZCV2 418 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 PRSS36Q5K4E3 855 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ASPGQ86U10 573 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ALYREFQ86V81 257 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 TADA1Q96BN2 335 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 RNF145Q96MT1 663 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 OR51B5Q9H339 312 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 HCN3Q9P1Z3 774 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 URB1O60287 2271 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 TLR4O00206 839 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 AP3D1O14617 1153 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 TOR1BO14657 336 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 NDUFV2P19404 249 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 PRPS1L1P21108 318 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ADRA1AP35348 466 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 SLC18A1P54219 525 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 CYP2R1Q6VVX0 501 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 OSBPL10Q9BXB5 764 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 PNO1Q9NRX1 252 aaKnown RBP9.53□□□□□ -0.88
LIG3-216ENST00000593099 BLOC1S6Q9UL45 172 aa9.53□□□□□ -0.88
LIG3-216ENST00000593099 ATXN2Q99700 1313 aaKnown RBP9.52□□□□□ -0.88
LIG3-216ENST00000593099 AQP9O43315 295 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 B4GALT2O60909 372 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 LDLRP01130 860 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 KLK1P06870 262 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 CASRP41180 1078 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 CTSCP53634 463 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 NDUFA5Q16718 116 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 VWA5B1Q5TIE3 1220 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 LIPJQ5W064 366 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 TMEM154Q6P9G4 183 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 PDZD3Q86UT5 571 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 ZNF761Q86XN6 746 aaPredicted RBP9.52□□□□□ -0.88
LIG3-216ENST00000593099 ART5Q96L15 291 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 DGAT2Q96PD7 388 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 OLFM1Q99784 485 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 BDH2Q9BUT1 245 aa9.52□□□□□ -0.88
LIG3-216ENST00000593099 REXO4Q9GZR2 422 aaKnown RBP9.52□□□□□ -0.88
LIG3-216ENST00000593099 ADAP2Q9NPF8 381 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms