RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 ABRQ12979 859 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 TRIP6Q15654 476 aaKnown RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 FILIP1LQ4L180 1135 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 SYT14P1Q58G82 188 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 PPP6R3Q5H9R7 873 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 ELFN2Q5R3F8 820 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 ARHGEF16Q5VV41 709 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 FAM166AQ6J272 317 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 PMF1Q6P1K2 205 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 CES3Q6UWW8 571 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 VASH2Q86V25 355 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 LUZP1Q86V48 1076 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 LAX1Q8IWV1 398 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 DNAJC10Q8IXB1 793 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 CENPLQ8N0S6 344 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 ARHGAP24Q8N264 748 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 TMEM199Q8N511 208 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 RASGEF1AQ8N9B8 481 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 THAP8Q8NA92 274 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 SLC16A11Q8NCK7 471 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 OR52B4Q8NGK2 314 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 MPLKIPQ8TAP9 179 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 OIT3Q8WWZ8 545 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 GGHQ92820 318 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 DAZLQ92904 295 aaKnown RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 COQ8BQ96D53 544 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 PGM2Q96G03 612 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 RASL10BQ96S79 203 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 PCYT2Q99447 389 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 MTERF1Q99551 399 aaKnown RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 GCOM2Q9BZD3 368 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 SIRPDQ9H106 197 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 UBQLN3Q9H347 655 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 ACTR8Q9H981 624 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 LRRC40Q9H9A6 602 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 KRCC1Q9NPI7 259 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 GSN-AS1Q9NRJ2 163 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 GKN1Q9NS71 199 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 TCP11L1Q9NUJ3 509 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 RBM28Q9NW13 759 aaKnown RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 TRNAU1APQ9NX07 287 aaKnown RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 TUBA8Q9NY65 449 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 PKD2L2Q9NZM6 624 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 TINAGQ9UJW2 476 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 CAB39Q9Y376 341 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-207ENST00000476169 NAALAD2Q9Y3Q0 740 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 MFHAS1Q9Y4C4 1052 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 MRC2Q9UBG0 1479 aa3.96□□□□□ -1.78
VPS13D-207ENST00000476169 URB2Q14146 1524 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 CUX2O14529 1486 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 C15orf38-AP3S2A0A0A6YYH1 394 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TRAV24A0A0B4J272 114 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 A0A0G2JPF8 293 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 A0A1W2PPK0 400 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TMEM129A0AVI4 362 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 MAGEB16A2A368 324 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TRIM49BA6NDI0 452 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 SLC15A5A6NIM6 579 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 C2orf81A6NN90 581 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 HNRNPCL3B7ZW38 293 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TMEM150CB9EJG8 249 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 F8VVB4 439 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 F8VWA3 439 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TMEM178BH3BS89 294 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 I6L893 689 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TIMM23O14925 209 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 CASQ2O14958 399 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 NUDT21O43809 227 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 SNX3O60493 162 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 RHOBTB1O94844 696 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 BMP10O95393 424 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 SLPIP03973 132 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 CYP1A2P05177 515 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 PROS1P07225 676 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 KRT19P08727 400 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 HNRNPCL4P0DMR1 293 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 RALAP11233 206 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 EZRP15311 586 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 ARSBP15848 533 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TNNI3P19429 210 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 PAICSP22234 425 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 ITGA3P26006 1051 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 MTIF2P46199 727 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 OR3A1P47881 315 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 NUCB2P80303 420 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 SPIBQ01892 262 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 MBTD1Q05BQ5 628 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 IL10RBQ08334 325 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 DDX39BQ13838 428 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 CTTNQ14247 550 aaKnown RBP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 PTGR1Q14914 329 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 EFNB3Q15768 340 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 RBBP7Q16576 425 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 SRSF7Q16629 238 aaKnown RBP eCLIP3.95□□□□□ -1.78
VPS13D-207ENST00000476169 SLC36A3Q495N2 470 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 CCDC152Q4G0S7 254 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 MANEAQ5SRI9 462 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 C9orf50Q5SZB4 431 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 AGAP6Q5VW22 663 aa3.95□□□□□ -1.78
VPS13D-207ENST00000476169 TYW3Q6IPR3 259 aaKnown RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms