RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NPHS1O60500 1241 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 SNUPNO95149 360 aaKnown RBP14.58□□□□□ -0.08
NPHP4-205ENST00000466897 OTCP00480 354 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 C1GALT1C1LP0DN25 315 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 FGF3P11487 239 aaPredicted RBP14.58□□□□□ -0.08
NPHP4-205ENST00000466897 PVRP15151 417 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 CXCR2P25025 360 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 MPSTP25325 297 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 GSTM2P28161 218 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 CSNK1G2P78368 415 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 LCP2Q13094 533 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 LAPTM5Q13571 262 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 ZIC1Q15915 447 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 GGTA1PQ4G0N0 100 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 ZC3H12BQ5HYM0 836 aaKnown RBP14.58□□□□□ -0.08
NPHP4-205ENST00000466897 SNAP47Q5SQN1 464 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 TMTC4Q5T4D3 741 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 LIPJQ5W064 366 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 TMPRSS11BQ86T26 416 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 NUDCD3Q8IVD9 361 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 HOMEZQ8IX15 550 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 FAM20CQ8IXL6 584 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 ARFGAP2Q8N6H7 521 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 ANKRD42Q8N9B4 389 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 L3MBTL4Q8NA19 623 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 RAB3IL1Q8TBN0 382 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 PPP4R1Q8TF05 950 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 THAP11Q96EK4 314 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 SEC16BQ96JE7 1060 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 CNDP1Q96KN2 507 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 ZNF382Q96SR6 550 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 CMKLR1Q99788 373 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 AIF1LQ9BQI0 150 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 MECRQ9BV79 373 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 GATA5Q9BWX5 397 aaPredicted RBP14.58□□□□□ -0.08
NPHP4-205ENST00000466897 NT5DC2Q9H857 520 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 IPPKQ9H8X2 491 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 ABCF3Q9NUQ8 709 aa14.58□□□□□ -0.08
NPHP4-205ENST00000466897 SIDT1Q9NXL6 827 aaKnown RBP14.58□□□□□ -0.08
NPHP4-205ENST00000466897 KCNE1BA0A087WTH5 132 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 CCDC187A0A096LP49 1063 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 TRBC2A0A5B9 178 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 A8MU76 341 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 B4E171 279 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 H7BY64 318 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 PRAMEF4O60810 478 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 EBLN1P0CF75 366 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 GRK2P25098 689 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 CSTF2P33240 577 aaKnown RBP eCLIP14.57□□□□□ -0.08
NPHP4-205ENST00000466897 GRK3P35626 688 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 HNF4AP41235 474 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 TSPAN7P41732 249 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 MLLT3P42568 568 aaPredicted RBP14.57□□□□□ -0.08
NPHP4-205ENST00000466897 GABRA4P48169 554 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 ARL4DP49703 201 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 PKNOX1P55347 436 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 RPS15AP62244 130 aaKnown RBP14.57□□□□□ -0.08
NPHP4-205ENST00000466897 REEP5Q00765 189 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 IRF8Q02556 426 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 ACY1Q03154 408 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 TRAF3Q13114 568 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 C16orf72Q14CZ0 275 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 PAGE2BQ5JRK9 111 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 CFAP157Q5JU67 520 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 CATSPEREQ5SY80 951 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 PRAMEF9Q5VWM5 478 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 GRHL2Q6ISB3 625 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 BPHLQ86WA6 291 aaPredicted RBP14.57□□□□□ -0.08
NPHP4-205ENST00000466897 KRT78Q8N1N4 520 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 CHCHD4Q8N4Q1 142 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 DNAJC22Q8N4W6 341 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 TBC1D19Q8N5T2 526 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 BMPERQ8N8U9 685 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 RCBTB1Q8NDN9 531 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 PRAP1Q96NZ9 151 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 NSUN5Q96P11 429 aaKnown RBP14.57□□□□□ -0.08
NPHP4-205ENST00000466897 ZFYVE21Q9BQ24 234 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 NOL11Q9H8H0 719 aaKnown RBP14.57□□□□□ -0.08
NPHP4-205ENST00000466897 SOHLH2Q9NX45 425 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 TSC22D4Q9Y3Q8 395 aa14.57□□□□□ -0.08
NPHP4-205ENST00000466897 CTSVO60911 334 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 CLDN9O95484 217 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 SERPINE1P05121 402 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 JUPP14923 745 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 AHRP35869 848 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 SEPHS1P49903 392 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 CCNG1P51959 295 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 CDH13P55290 713 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 CHIT1Q13231 466 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 DOC2AQ14183 400 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 RCN2Q14257 317 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 XKR6Q5GH73 641 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 C10orf62Q5T681 223 aaPredicted RBP14.56□□□□□ -0.08
NPHP4-205ENST00000466897 TRIM42Q8IWZ5 723 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 CCNYL1Q8N7R7 359 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 OR52B6Q8NGF0 335 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 OR8K5Q8NH50 307 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 UBE2E3Q969T4 207 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 ZNF285Q96NJ3 590 aa14.56□□□□□ -0.08
NPHP4-205ENST00000466897 DRC3Q9H069 523 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms