RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LMX1AQ8TE12 382 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RSC1A1Q92681 617 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 HTRA1Q92743 480 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF558Q96NG5 402 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FOXC2Q99958 501 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TM6SF1Q9BZW5 370 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF436Q9C0F3 470 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CDT1Q9H211 546 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SEMA4BQ9NPR2 832 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PHPT1Q9NRX4 125 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZDHHC3Q9NYG2 299 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MALT1Q9UDY8 824 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ERVK-19Q9WJR5 959 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHGC5Q9Y5F6 944 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FAM135BQ49AJ0 1406 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PQ27 194 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PQ64 194 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PQD8 194 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TLR5O60602 858 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 FKTNO75072 461 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PAGE1O75459 146 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ADH1AP07327 375 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RPS17P08708 135 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RD3LP0DJH9 198 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CCNB1P14635 433 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ATP4AP20648 1035 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 IDSP22304 550 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SDC2P34741 201 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TRIM23P36406 574 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ETV4P43268 484 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 MAGEB1P43366 347 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GABRA4P48169 554 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TOB1P50616 345 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 BMXP51813 675 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RPS3AP61247 264 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RPS15P62841 145 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GCNT1Q02742 428 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 NPRL3Q12980 569 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 HSPB3Q12988 150 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 PFKFB4Q16877 469 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CLEC12AQ5QGZ9 265 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TIGD3Q6B0B8 471 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KDM4DQ6B0I6 523 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 BORAQ6PGQ7 559 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 TIPARPQ7Z3E1 657 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SH3RF1Q7Z6J0 888 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 RANBP3LQ86VV4 465 aaPredicted RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 YIPF7Q8N8F6 280 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 UBAC2Q8NBM4 344 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 OR4C15Q8NGM1 316 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SMARCD1Q96GM5 515 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SLC6A7Q99884 636 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 ZFYVE21Q9BQ24 234 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 GAL3ST2Q9H3Q3 398 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SGK2Q9HBY8 427 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 SAMHD1Q9Y3Z3 626 aaKnown RBP4.54□□□□□ -1.68
SCN1A-202ENST00000375405 USP3Q9Y6I4 520 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 KDM5BQ9UGL1 1544 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 DOCK9Q9BZ29 2069 aa4.54□□□□□ -1.68
SCN1A-202ENST00000375405 CDC14CA4D256 554 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CARNS1A5YM72 827 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ANKRD61A6NGH8 418 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 AGPSO00116 658 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SYN3O14994 580 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 GRM6O15303 877 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 LRRTM2O43300 516 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SHOX2O60902 331 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 LGR5O75473 907 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ATE1O95260 518 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 DPP4P27487 766 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 THBS2P35442 1172 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CAP2P40123 477 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ETV3P41162 512 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 RPL14P50914 215 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 UBE2MP61081 183 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 PCBP2Q15366 365 aaKnown RBP eCLIP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SV2AQ7L0J3 742 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ENOSF1Q7L5Y1 443 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ARHGAP22Q7Z5H3 698 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZC3HC1Q86WB0 502 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 METTL27Q8N6F8 245 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C3orf20Q8ND61 904 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 FBXO22Q8NEZ5 403 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 HUS1BQ8NHY5 278 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SMAP2Q8WU79 429 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ASB11Q8WXH4 323 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CPNE4Q96A23 557 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 EMID1Q96A84 441 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SERPINB11Q96P15 392 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 MTMR9Q96QG7 549 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 SULT4A1Q9BR01 284 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 NAALAD2Q9Y3Q0 740 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 ZFYVE9O95405 1425 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 C2orf92A0A1B0GVN3 265 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PQ09 198 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CCDC188H7C350 402 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 OR1F1O43749 312 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 CST8O60676 142 aa4.53□□□□□ -1.68
SCN1A-202ENST00000375405 HNRNPA2B1P22626 353 aaKnown RBP4.53□□□□□ -1.68
SCN1A-202ENST00000375405 EPHX2P34913 555 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms