RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 ZNF30P17039 623 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 PSMB9P28065 219 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 MSX2P35548 267 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-218ENST00000545889 PTGIRP43119 386 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 CDC42P60953 191 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 HSPB3Q12988 150 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 KRR1Q13601 381 aaKnown RBP8.39□□□□□ -1.07
CLIP1-218ENST00000545889 FASTKD3Q14CZ7 662 aaKnown RBP8.39□□□□□ -1.07
CLIP1-218ENST00000545889 SF3B4Q15427 424 aaKnown RBP eCLIP8.39□□□□□ -1.07
CLIP1-218ENST00000545889 PDK4Q16654 411 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 MS4A13Q5J8X5 152 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 LYSMD4Q5XG99 296 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 VASH1Q7L8A9 365 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-218ENST00000545889 CPNE9Q8IYJ1 553 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 SETD9Q8NE22 299 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 ZNF599Q96NL3 588 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 SLC2A13Q96QE2 648 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 TRMOQ9BU70 441 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 CHID1Q9BWS9 393 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 CRISPLD1Q9H336 500 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 METTL7AQ9H8H3 244 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 LRTM1Q9HBL6 345 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 SDHAF3Q9NRP4 125 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 SLC7A8Q9UHI5 535 aa8.39□□□□□ -1.07
CLIP1-218ENST00000545889 KLHL18O94889 574 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 SEMA4FO95754 770 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CRYZL1O95825 349 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 HEXBP07686 556 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 T-ENOLP0DO92 83 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CHRNB1P11230 501 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 IRS1P35568 1242 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CCR8P51685 355 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 UGT2B15P54855 530 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TUBA3CQ13748 450 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 FGL2Q14314 439 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ELAVL3Q14576 367 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TCTN1Q2MV58 587 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 PKDCCQ504Y2 493 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 SPDYCQ5MJ68 293 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ZNF362Q5T0B9 420 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 NIPAL1Q6NVV3 410 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CMC1Q7Z7K0 106 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 PIM3Q86V86 326 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 DCBLD1Q8N8Z6 715 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ACMSDQ8TDX5 336 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CPT1BQ92523 772 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TEFMQ96QE5 360 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 OR2M4Q96R27 311 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 DEFB126Q9BYW3 111 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 RARRES3Q9UL19 164 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 PARP14Q460N5 1801 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ZNF726A6NNF4 738 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 METTL18O95568 372 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 DRD1P21728 446 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 SLC5A2P31639 672 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 DRG2P55039 364 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 WDR4P57081 412 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 OLIG2Q13516 323 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 DHCR24Q15392 516 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TAF1AQ15573 450 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ARHGAP36Q6ZRI8 547 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 AKAP14Q86UN6 197 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 PDSS2Q86YH6 399 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 SLC35B2Q8TB61 432 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 RAB7BQ96AH8 199 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 EFHD2Q96C19 240 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 PTGES2Q9H7Z7 377 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 IL21RQ9HBE5 538 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 FBRSL1Q9HCM7 1045 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 IGSF9Q9P2J2 1179 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CNOT6Q9ULM6 557 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 WASHC1A8K0Z3 465 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 WASH3PC4AMC7 463 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 J3KR12 359 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ERI3O43414 337 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ADAM23O75077 832 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 AP2A1O95782 977 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 C2P06681 752 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ATF6P18850 670 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 POLR2CP19387 275 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 DNASE1L1P49184 302 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 NUMA1Q14980 2115 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TSTD2Q5T7W7 516 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 WASH2PQ6VEQ5 465 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CDH24Q86UP0 819 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 JAZF1Q86VZ6 243 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 CACTIN-AS1Q8N1I8 211 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TEX47Q8TBZ9 253 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 PRR11Q96HE9 360 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 C17orf62Q9BQA9 187 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 SNX15Q9NRS6 342 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 COQ3Q9NZJ6 369 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 POLR3HQ9Y535 204 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 TTC3P53804 2025 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 FAM234BA2RU67 622 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 LINC01553A4QN01 128 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 VILLO15195 856 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 RRP8O43159 456 aaKnown RBP8.38□□□□□ -1.07
CLIP1-218ENST00000545889 ITM2AO43736 263 aa8.38□□□□□ -1.07
CLIP1-218ENST00000545889 SDC3O75056 442 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms