RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 TMEM159Q96B96 161 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 AP2M1Q96CW1 435 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 PHF21BQ96EK2 531 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 PTCD3Q96EY7 689 aaKnown RBP8.12□□□□□ -1.11
CHD4-208ENST00000540960 MAELQ96JY0 434 aaKnown RBP8.12□□□□□ -1.11
CHD4-208ENST00000540960 HGH1Q9BTY7 390 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 CCDC106Q9BWC9 280 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 EFCAB1Q9HAE3 211 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 PARVBQ9HBI1 364 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 CYP4F12Q9HCS2 524 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 SLC40A1Q9NP59 571 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 KLC4Q9NSK0 619 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 FBXL12Q9NXK8 326 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 MAP4K5Q9Y4K4 846 aa8.12□□□□□ -1.11
CHD4-208ENST00000540960 C17orf113A0A1B0GUU1 675 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ZNF839A8K0R7 811 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 EFCAB7A8K855 629 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 BBIP1A8MTZ0 92 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 B2RBV5 119 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 UBXN8O00124 270 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 IFRD1O00458 451 aaPredicted RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 GAPDHSO14556 408 aaPredicted RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 ZNF195O14628 629 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 LIN7AO14910 233 aaPredicted RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 AREL1O15033 823 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 UBDO15205 165 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 GRID2O43424 1007 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 OR1I1O60431 355 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 RASSF9O75901 435 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 WDR47O94967 919 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 STAMBPO95630 424 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 CATP04040 527 aaKnown RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 PDGFAP04085 211 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 KRT16P08779 473 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ADRB3P13945 408 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 DRD2P14416 443 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 IDO1P14902 403 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 LHCGRP22888 699 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 MPSTP25325 297 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 AOAHP28039 575 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 EEF1DP29692 281 aaKnown RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 GKP32189 559 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 HSD17B2P37059 387 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 CCR5P51681 352 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PNLIPRP1P54315 467 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 TIAL1Q01085 375 aaKnown RBP eCLIP8.11□□□□□ -1.11
CHD4-208ENST00000540960 SF3A3Q12874 501 aaKnown RBP eCLIP8.11□□□□□ -1.11
CHD4-208ENST00000540960 RPA4Q13156 261 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 CYLC2Q14093 348 aaPredicted RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 RPS6KA2Q15349 733 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 OR4D1Q15615 310 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 BCL7AQ4VC05 210 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ATP13A5Q4VNC0 1218 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 UNC50Q53HI1 259 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ZNF542PQ5EBM4 170 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 HENMT1Q5T8I9 393 aaKnown RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 ZNF776Q68DI1 518 aaPredicted RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 CYB5D1Q6P9G0 228 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 TMEM207Q6UWW9 146 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 LIPIQ6XZB0 460 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 LRRC70Q7Z2Q7 622 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 TECPR1Q7Z6L1 1165 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 TSPAN33Q86UF1 283 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ZSWIM9Q86XI8 627 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 SPATA6LQ8N4H0 392 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PCYOX1LQ8NBM8 494 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 OR2T34Q8NGX1 318 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 GLMNQ92990 594 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PTERQ96BW5 349 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 EID2BQ96D98 161 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 NUS1Q96E22 293 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 C19orf60Q96EN9 201 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 DTD2Q96FN9 168 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ANKRD27Q96NW4 1050 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 EGFL8Q99944 293 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 CCM2Q9BSQ5 444 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 SLC25A23Q9BV35 468 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 TBC1D10AQ9BXI6 508 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 MRPL1Q9BYD6 325 aaKnown RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 SLC29A3Q9BZD2 475 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 C20orf27Q9GZN8 174 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 GSTO2Q9H4Y5 243 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 SYNDIG1Q9H7V2 258 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 MID1IP1Q9NPA3 183 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 UTP6Q9NYH9 597 aaKnown RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 WWOXQ9NZC7 414 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 OPTCQ9UBM4 332 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 ZDHHC2Q9UIJ5 367 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PRDM4Q9UKN5 801 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PRPF19Q9UMS4 504 aaKnown RBP8.11□□□□□ -1.11
CHD4-208ENST00000540960 GPR34Q9UPC5 381 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 MAPRE3Q9UPY8 281 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 NCKAP1Q9Y2A7 1128 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 MED16Q9Y2X0 877 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PCDHB11Q9Y5F2 797 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 UNC13CQ8NB66 2214 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 CSPG4Q6UVK1 2322 aa8.11□□□□□ -1.11
CHD4-208ENST00000540960 PKDREJQ9NTG1 2253 aa8.1□□□□□ -1.11
CHD4-208ENST00000540960 EME2A4GXA9 379 aaPredicted RBP8.1□□□□□ -1.11
CHD4-208ENST00000540960 NPEPPSL1A6NEC2 478 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms