RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PRF1P14222 555 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 MGAT1P26572 445 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 CARSP49589 748 aaKnown RBP12.04□□□□□ -0.48
SKA1-205ENST00000494518 ARF3P61204 181 aaPredicted RBP12.04□□□□□ -0.48
SKA1-205ENST00000494518 BASP1P80723 227 aaKnown RBP12.04□□□□□ -0.48
SKA1-205ENST00000494518 SYT16Q17RD7 645 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 HKDC1Q2TB90 917 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.04□□□□□ -0.48
SKA1-205ENST00000494518 B3GNTL1Q67FW5 361 aaPredicted RBP12.04□□□□□ -0.48
SKA1-205ENST00000494518 KBTBD2Q8IY47 623 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 SPC24Q8NBT2 197 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 MFSD3Q96ES6 412 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 VPS50Q96JG6 964 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 ZFYVE21Q9BQ24 234 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 TREX1Q9NSU2 369 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 IL1RAPL1Q9NZN1 696 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 GALPQ9UBC7 116 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 TRPC4Q9UBN4 977 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 RUVBL1Q9Y265 456 aaKnown RBP12.04□□□□□ -0.48
SKA1-205ENST00000494518 CACNA1CQ13936 2221 aa12.04□□□□□ -0.48
SKA1-205ENST00000494518 NSG1A0A0A6YYJ2 146 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 OR2A25A4D2G3 310 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 ARHGEF33A8MVX0 844 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 IDSB3KWA1 339 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 JRKO75564 520 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 VAPBO95292 243 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 FKBP9O95302 570 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 PRR35P0CG20 571 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 RPS3P23396 243 aaKnown RBP eCLIP12.03□□□□□ -0.48
SKA1-205ENST00000494518 ARNTP27540 789 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 TNFRSF8P28908 595 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 CMPK1P30085 196 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 CCNFP41002 786 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 EMP2P54851 167 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 PER3P56645 1201 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 ZRSR2Q15696 482 aaKnown RBP12.03□□□□□ -0.48
SKA1-205ENST00000494518 MUM1Q2TAK8 710 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 ACSBG2Q5FVE4 666 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 ATG9BQ674R7 924 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 PRMT9Q6P2P2 845 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 FBXO42Q6P3S6 717 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 CSNK1A1LQ8N752 337 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 BCORP1Q8N888 145 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 PPFIBP2Q8ND30 876 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 PEX13Q92968 403 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 BIRC8Q96P09 236 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 TAAR6Q96RI8 345 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 SLX1AQ9BQ83 275 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 MRPS30Q9NP92 439 aaKnown RBP12.03□□□□□ -0.48
SKA1-205ENST00000494518 SPATA7Q9P0W8 599 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 GUCA1BQ9UMX6 200 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 CRYL1Q9Y2S2 319 aa12.03□□□□□ -0.48
SKA1-205ENST00000494518 GTF3C1Q12789 2109 aa12.02□□□□□ -0.48
SKA1-205ENST00000494518 IGKV1-8A0A0C4DH67 115 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 TCRBV7S3A2A0A539 114 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 PRSS44E7EML9 344 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 KPNA5O15131 536 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 P2RX6O15547 441 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 USP1O94782 785 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 HEXBP07686 556 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 CHRM3P20309 590 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 RPA3P35244 121 aaPredicted RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 KCNJ1P48048 391 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 SNRPNP63162 240 aaKnown RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 MAT1AQ00266 395 aaKnown RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 SIX1Q15475 284 aaPredicted RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 PRTGQ2VWP7 1150 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 NDUFAF7Q7L592 441 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 ADCK2Q7Z695 626 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 PAQR7Q86WK9 346 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 LRRC6Q86X45 466 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 TICAM1Q8IUC6 712 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 PLD3Q8IV08 490 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 SHISA5Q8N114 240 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 OR9A1PQ8NGU1 263 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 HMGCLL1Q8TB92 370 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 COG1Q8WTW3 980 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 PSMF1Q92530 271 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 LPGAT1Q92604 370 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 MMABQ96EY8 250 aaPredicted RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 LMF1Q96S06 567 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 TRIM56Q9BRZ2 755 aaKnown RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 FRMD8P1Q9BZ68 369 aaPredicted RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 UNKQ9C0B0 810 aaKnown RBP12.02□□□□□ -0.49
SKA1-205ENST00000494518 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.02□□□□□ -0.49
SKA1-205ENST00000494518 BFARQ9NZS9 450 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 TAC3Q9UHF0 121 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 PCYOX1Q9UHG3 505 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 SH3BGRL2Q9UJC5 107 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 KLK4Q9Y5K2 254 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 CCDC168Q8NDH2 2452 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 CSMD2Q7Z408 3487 aa12.02□□□□□ -0.49
SKA1-205ENST00000494518 A0A0A6YYC8 382 aaPredicted RBP12.01□□□□□ -0.49
SKA1-205ENST00000494518 DYTNA2CJ06 578 aa12.01□□□□□ -0.49
SKA1-205ENST00000494518 I3L1I5 382 aaPredicted RBP12.01□□□□□ -0.49
SKA1-205ENST00000494518 VPS26AO75436 327 aa12.01□□□□□ -0.49
SKA1-205ENST00000494518 MATN4O95460 622 aa12.01□□□□□ -0.49
SKA1-205ENST00000494518 STSP08842 583 aa12.01□□□□□ -0.49
SKA1-205ENST00000494518 ITGAMP11215 1152 aa12.01□□□□□ -0.49
SKA1-205ENST00000494518 CXCR2P25025 360 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms