RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 FAM60AQ9NP50 221 aa28.2■■■□□ 2.1
USP42-202ENST00000404008 NEUROG3Q9Y4Z2 214 aa28.2■■■□□ 2.1
USP42-202ENST00000404008 TNPO3Q9Y5L0 923 aaKnown RBP28.2■■■□□ 2.1
USP42-202ENST00000404008 G3V2L1 256 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 PLD2O14939 933 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 DLX3O60479 287 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 CCNT2O60583 730 aaKnown RBP28.19■■■□□ 2.1
USP42-202ENST00000404008 SIX3O95343 332 aaPredicted RBP28.19■■■□□ 2.1
USP42-202ENST00000404008 FGF3P11487 239 aaPredicted RBP28.19■■■□□ 2.1
USP42-202ENST00000404008 CCL4P13236 92 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 FOLR1P15328 257 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 CDC16Q13042 620 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 PCBP2Q15366 365 aaKnown RBP eCLIP28.19■■■□□ 2.11e-8■■□□□ 14.3
USP42-202ENST00000404008 METTL2BQ6P1Q9 378 aaKnown RBP28.19■■■□□ 2.1
USP42-202ENST00000404008 PAQR7Q86WK9 346 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 RDH11Q8TC12 318 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 SLC5A11Q8WWX8 675 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 TLCD1Q96CP7 247 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 PLCD4Q9BRC7 762 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 OPTCQ9UBM4 332 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 SNX7Q9UNH6 387 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 DYRK1BQ9Y463 629 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 KCNE2Q9Y6J6 123 aa28.19■■■□□ 2.1
USP42-202ENST00000404008 OR2A25A4D2G3 310 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 LRRC14BA6NHZ5 514 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 K7EPI3 171 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 NRP2O60462 931 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 CDH1P12830 882 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 ATP5F1P24539 256 aaPredicted RBP28.18■■■□□ 2.1
USP42-202ENST00000404008 HRH2P25021 359 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 PDK4Q16654 411 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 TMTC4Q5T4D3 741 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 ZYG11AQ6WRX3 759 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 TCP10LQ8TDR4 215 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 SH3GL2Q99962 352 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 TMEM184CQ9NVA4 438 aa28.18■■■□□ 2.1
USP42-202ENST00000404008 B4E171 279 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 H7BY64 318 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 MSL3P1P0C860 447 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 MYL2P10916 166 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 ITIH1P19827 911 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 EEF1DP29692 281 aaKnown RBP28.17■■■□□ 2.1
USP42-202ENST00000404008 TSPAN7P41732 249 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 MC2RQ01718 297 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 ERMP1Q7Z2K6 904 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 SNX31Q8N9S9 440 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 ABHD11Q8NFV4 315 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 PRR11Q96HE9 360 aaPredicted RBP28.17■■■□□ 2.1
USP42-202ENST00000404008 PRAP1Q96NZ9 151 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 FAM111AQ96PZ2 611 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 POLR1BQ9H9Y6 1135 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 GPRC5BQ9NZH0 403 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 SLC17A7Q9P2U7 560 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 PCDHGA8Q9Y5G5 932 aa28.17■■■□□ 2.1
USP42-202ENST00000404008 E2F3O00716 465 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 JMJD7P0C870 316 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 GNAZP19086 355 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 EPORP19235 508 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 GABRA4P48169 554 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 AGBL2Q5U5Z8 902 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 DNAJC22Q8N4W6 341 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 CCDC63Q8NA47 563 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 ARMC2Q8NEN0 867 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 ARL8AQ96BM9 186 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 PKNOX2Q96KN3 472 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 OR6C1Q96RD1 312 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 CAPS2Q9BXY5 557 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 NRSN2Q9GZP1 204 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 FBXO8Q9NRD0 319 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 PISDQ9UG56 409 aa28.16■■■□□ 2.1
USP42-202ENST00000404008 ASPMQ8IZT6 3477 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 E7EQ34 232 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 CTSVO60911 334 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 ETV5P41161 510 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 MAGOHP61326 146 aaKnown RBP28.15■■■□□ 2.1
USP42-202ENST00000404008 GABREP78334 506 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 CSNK1G2P78368 415 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 ACY1Q03154 408 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 TUBB3Q13509 450 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 GPR19Q15760 415 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 CATSPEREQ5SY80 951 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 FOXR1Q6PIV2 292 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 ADCK2Q7Z695 626 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 SLC22A9Q8IVM8 553 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 OR4K1Q8NGD4 311 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 C1QTNF3Q9BXJ4 246 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 FGF21Q9NSA1 209 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 COPG2Q9UBF2 871 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 MID2Q9UJV3 735 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 PILRAQ9UKJ1 303 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 MSRB2Q9Y3D2 182 aa28.15■■■□□ 2.1
USP42-202ENST00000404008 MDC1Q14676 2089 aaKnown RBP28.15■■■□□ 2.1
USP42-202ENST00000404008 PRPF4O43172 522 aaKnown RBP eCLIP28.14■■■□□ 2.1
USP42-202ENST00000404008 HCRTR1O43613 425 aa28.14■■■□□ 2.1
USP42-202ENST00000404008 RPS17P08708 135 aaKnown RBP28.14■■■□□ 2.1
USP42-202ENST00000404008 CPA3P15088 417 aa28.14■■■□□ 2.1
USP42-202ENST00000404008 EZRP15311 586 aaKnown RBP28.14■■■□□ 2.1
USP42-202ENST00000404008 CCR8P51685 355 aa28.14■■■□□ 2.1
USP42-202ENST00000404008 PRKAA2P54646 552 aa28.14■■■□□ 2.1
USP42-202ENST00000404008 HERVK_113P63132 956 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms