RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 UBTD2Q8WUN7 234 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ASB12Q8WXK4 309 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 FCRL3Q96P31 734 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 LYSMD1Q96S90 227 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 BHLHE41Q9C0J9 482 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 FAM192AQ9GZU8 254 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 POT1Q9NUX5 634 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ALPPP05187 535 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ARSAP15289 507 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 GSTM3P21266 225 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 CACNA2D1P54289 1103 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 BCL7AQ4VC05 210 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 TMEM259Q4ZIN3 620 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 TCHHL1Q5QJ38 904 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 PTCRAQ6ISU1 281 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 OR4F6Q8NGB9 312 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 OR8J3Q8NGG0 315 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 SP7Q8TDD2 431 aaPredicted RBP13.26□□□□□ -0.29
LDLR-201ENST00000252444 HPS4Q9NQG7 708 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 NCDNQ9UBB6 729 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 CDH22Q9UJ99 828 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 C1orf226A1L170 272 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 SEMA3DO95025 777 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 PRKAG1P54619 331 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 LYSMD4Q5XG99 296 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 NXPE4Q6UWF7 544 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ABRAXAS1Q6UWZ7 409 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 HDDC2Q7Z4H3 204 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 AMIGO1Q86WK6 493 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 C12orf40Q86WS4 652 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 GLIS1Q8NBF1 620 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 BBS10Q8TAM1 723 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 ADI1Q9BV57 179 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 GPR174Q9BXC1 333 aa13.26□□□□□ -0.29
LDLR-201ENST00000252444 IGLON5A6NGN9 336 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 PEX12O00623 359 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 GSC2O15499 205 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CST1P01037 141 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 JUNDP17535 347 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CCNA2P20248 432 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 IL5RAQ01344 420 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 EML3Q32P44 896 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 GLYATQ6IB77 296 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 PARGQ86W56 976 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 DNAJB14Q8TBM8 379 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CA14Q9ULX7 337 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 MYL12BO14950 172 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 MAN1A2O60476 641 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 NR2F6P10588 404 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CLCN2P51788 898 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 ABHD18Q0P651 414 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 TRIM25Q14258 630 aaKnown RBP13.25□□□□□ -0.29
LDLR-201ENST00000252444 NR0B2Q15466 257 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 ZNF440Q8IYI8 595 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 SUN3Q8TAQ9 357 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 NMUR2Q9GZQ4 415 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 NOL6Q9H6R4 1146 aaKnown RBP13.25□□□□□ -0.29
LDLR-201ENST00000252444 CLK4Q9HAZ1 481 aaKnown RBP13.25□□□□□ -0.29
LDLR-201ENST00000252444 SRPK3Q9UPE1 567 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 HTRA2O43464 458 aaPredicted RBP13.25□□□□□ -0.29
LDLR-201ENST00000252444 PDHA1P08559 390 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 ARF5P84085 180 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 SPIBQ01892 262 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 LIPEQ05469 1076 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 MYBPC3Q14896 1274 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 OR52E8Q6IFG1 317 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 PNCKQ6P2M8 343 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 LIPIQ6XZB0 460 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 GAREM2Q75VX8 874 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 OFCC1Q8IZS5 231 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 PIGXQ8TBF5 258 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CLPTM1LQ96KA5 538 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 RNF38Q9H0F5 515 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 LIPT1Q9Y234 373 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 MROH6A6NGR9 719 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 ARHGEF33A8MVX0 844 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 TPST1O60507 370 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CD247P20963 164 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 UQCRC2P22695 453 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 WDR4P57081 412 aaKnown RBP13.25□□□□□ -0.29
LDLR-201ENST00000252444 CYP4F2P78329 520 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 KCTD11Q693B1 232 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 ALG1LQ6GMV1 187 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 Q6ZNB5 142 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 GK5Q6ZS86 529 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 MARK4Q96L34 752 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 UBE2ZQ9H832 354 aaPredicted RBP13.25□□□□□ -0.29
LDLR-201ENST00000252444 SLCO3A1Q9UIG8 710 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 RAB26Q9ULW5 256 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 TIMM22Q9Y584 194 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 SIPA1L1O43166 1804 aa13.25□□□□□ -0.29
LDLR-201ENST00000252444 CDC7O00311 574 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 ADAM12O43184 909 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 CENPAP49450 140 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 NTHL1P78549 312 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 SLC25A3Q00325 362 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 COX18Q8N8Q8 333 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 WDR60Q8WVS4 1066 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 PKMYT1Q99640 499 aa13.24□□□□□ -0.29
LDLR-201ENST00000252444 EPYCQ99645 322 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms