RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 CLPTM1LQ96KA5 538 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ZNF641Q96N77 438 aaPredicted RBP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 RNF121Q9H920 327 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 SPHK2Q9NRA0 654 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 SMCHD1A6NHR9 2005 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 HCRTO43612 131 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CDC40O60508 579 aaKnown RBP eCLIP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 COQ9O75208 318 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ECI2O75521 394 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 IMPDH1P20839 514 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 GMFBP60983 142 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 RPL26P61254 145 aaKnown RBP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 VLDLRP98155 873 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 HMGCS1Q01581 520 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ZNF33AQ06730 810 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 LRRC70Q7Z2Q7 622 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 SIAH1Q8IUQ4 282 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 TMEM126BQ8IUX1 230 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CCDC54Q8NEL0 328 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 OR10H4Q8NGA5 316 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 OR5M3Q8NGP4 307 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 OR2AJ1Q8NGZ0 328 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 DNAJB8Q8NHS0 232 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 PXYLP1Q8TE99 480 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ZDHHC12Q96GR4 267 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 TMEM209Q96SK2 561 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 SLC35A5Q9BS91 424 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CRTAC1Q9NQ79 661 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 MARK1Q9P0L2 795 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 LGALS13Q9UHV8 139 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 A0A1W2PQ72 361 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 PIRO00625 290 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ZNF208O43345 1280 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 KLF8O95600 359 aaPredicted RBP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 HNRNPA1P09651 372 aaKnown RBP eCLIP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ARCN1P48444 511 aaKnown RBP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 TARDBPQ13148 414 aaKnown RBP eCLIP13.14□□□□□ -0.312e-7■■■■□ 26.4
TRAF3-208ENST00000560371 TCEAL6Q6IPX3 200 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 DCUN1D3Q8IWE4 304 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CAMK1GQ96NX5 476 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 IFT27Q9BW83 186 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 SDHAF3Q9NRP4 125 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 KLRF1Q9NZS2 232 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 PPM1HQ9ULR3 514 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 COL1A1P02452 1464 aaPredicted RBP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 TRIM64A6NGJ6 449 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CYP11A1P05108 521 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 MTPNP58546 118 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 TMEM115Q12893 351 aaPredicted RBP13.14□□□□□ -0.31
TRAF3-208ENST00000560371 GALNTL5Q7Z4T8 443 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 KBTBD6Q86V97 674 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 ARMC5Q96C12 935 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 SLC25A36Q96CQ1 311 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 NECTIN4Q96NY8 510 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 UTS2RQ9UKP6 389 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CYP8B1Q9UNU6 501 aa13.14□□□□□ -0.31
TRAF3-208ENST00000560371 CXCR6O00574 342 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 PAPSS2O95340 614 aaPredicted RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 PER3P56645 1201 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 PAFAH1B3Q15102 231 aaKnown RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 CMTR2Q8IYT2 770 aaKnown RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 ZSCAN1Q8NBB4 408 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 OR2L5Q8NG80 312 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 OR4K17Q8NGC6 315 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 SLC35B2Q8TB61 432 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 S100ZQ8WXG8 99 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 FAM83CQ9BQN1 747 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 MAN2B1O00754 1011 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 RLN1P04808 185 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 THRBP10828 461 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 PREPP48147 710 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 NRLP54845 237 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 QPRTQ15274 297 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 LCN1P1Q5VSP4 162 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 FAM13CQ8NE31 585 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 TRIM63Q969Q1 353 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 ING3Q9NXR8 418 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 SIX3O95343 332 aaPredicted RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 RPL5P46777 297 aaKnown RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 KCNJ5P48544 419 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 QPCTQ16769 361 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 THOC6Q86W42 341 aaKnown RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 C11orf24Q96F05 449 aaPredicted RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 NPY6RQ99463 290 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 FLRT1Q9NZU1 646 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 PCDHGA12O60330 932 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 SERPINA3P01011 423 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 DBIP07108 87 aaKnown RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 TLR1Q15399 786 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 RGS21Q2M5E4 152 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 TXNRD3NBQ6F5E7 133 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 C12orf76Q8N812 135 aaPredicted RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 RAB7BQ96AH8 199 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 COL21A1Q96P44 957 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 SSU72Q9NP77 194 aaKnown RBP13.13□□□□□ -0.31
TRAF3-208ENST00000560371 C11orf16Q9NQ32 467 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 PCDHGA2Q9Y5H1 932 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 LOC110117498-PIK3R3F6TDL0 507 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 LDB2O43679 373 aa13.13□□□□□ -0.31
TRAF3-208ENST00000560371 TMEM63AO94886 807 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms